Gene detail

Detailed information of BRAKERNUSP00000042054.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_044182646.1, LOW QUALITY PROTEIN: hemicentin-1-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000042054

ATGCTGACGATCACAGCTTACAAAAATCAATCTGGAAAGTACTGGTGTTCCGCGTACAATGGCTTAGGAGAGAGAGTTAATGCCAGCGCTAACCTAAATGTACAATttaaacCTAAACAGACAAATCTGTCAGTCAATGTGGATATCCTCAAGCCTGTGCCATTTGGCGTCTCAATCGAGTTCTCATGCACCACACATTCACATCCACATGCTGAGGGATTCAAATTCTACCGTGATGAGAAGCTGTTGGGTAGCAACAGCACAGGTATCTACAATCTGCGACTGGAAAGGAGCGGCTTGTATTCTTGTGTGCCCTTCAACAGTGCAGGAGAAGGAAAAAGAGCTACTTTGAGGATTAACGTTAATGCGTGGCAGCCTTCCTTCGAGAACTTGCTCTTTGGTCCGTTCTACCTATTTAAGGGGATCCAAGCACGTTTGCCCTGTAAGCCTTCAGCGGAGCCGTCTCCCACAATCAAATGGCTCAAAGATGGAGTGGCTCTTAGATATGGAGAAAATGGAAGCTATAGTTTGAATTCGGACGGTACACTTGTTATCAACAAAGTCGATGACAGTGATTCTGGAAGATACACCTGTGTGGCTGAGAACTACTTTGGGAAGGCTAACGTAACAGCAAGTGGTATTTTACTTGAGAGAACAAAACTTGTTCGCAAGCCCAGAAACATAACAGTTGCAGAGGGCTCAAGTTTGAAGCTGCGTTGCAGGGCATCTAAGGATCCTAATTTAGAATTGAGGTATATCTGGAAAAAGGATGGAGCGGTTATCATGGATGTATCTAACAGTGAGTGGCAGGAAAAAGATTTCATGTTGACACTATCAAACATTGGCTTCCAAGATGCTGGAGTGTACACTTGTGTTGCGCATACTCCAGAACCCAGGGTATCTGAAGACATGGCTTCAGCTGTTGTGTCAATTGAAGgTGCCCCATTTCCTCCCACCAACGTCCAAATAACAGATTGCTCCAGCAACCGAACAAACATTTCGTGGACCCCCAATCTCTCGAATCGAACCCAAGTAACCCACCATTTGATTGAGCAGGAAACGAACCATGAGCCATTCTCCTTTAAGGTCATCTACAACGTCACCAATCCTAATTCCACGTCACTGACCTTGGAGCTACCCGCATGGTCAACTCTTCGTTTTCGTGTAAGAGCTGTTAGTAACGTTAAACTAAGTCGACCCAGTGAAGCTACTGCTGAAGGAATTTGTACCACTCCCGTTGGAGTTCCTCAGATGTACCCAATGAATTTGAGAGGCACCGCCAAAAAAGCAAACCAGCTTTCTATCACCTGGACCCCGATGCCAAAGACTAAATGGAATGCGCCTGGGTGCTATTACATACTGAAATACAGACAGAAAAACTTGCGCGGTGACTGGAGGACAGAAAAGATTGGGGATTCCAGTGTGCATATGTTTTCAGTTTCCGACCCTGGGTATTACCAGCCgtgggagtttaagatctgtgCTGGCAACCATCAAGGTCTCGGACCGGAGAGTCCTATCAGCAGGTCGTTTTCTGGTCAAGATGCACCGGATGTGAAACCAGACGGTGCTGGAACTCAGGGTGTCAATGCGACCAGCGTCGCGCTAGCCTGGAAACCGGTTACTCTGAATAGAGGAAGTGTCGATGGATACAAGATATATTACTGGGTGAACAGTCGCTCAGTCATTTCTCGACGACGAAGAGAAGCTATTCCAACCAACGCAAAACTCCTTGTTGTGGAAGGCGGAGAAACACGGAAAGCCACTCTCTTGGGTCTGAAACCATATACGAACTATCGAGTGGTCGTCAAAGCATTCAACACAGGCGGAGAGGGGCCGGCGAGTGCTCCTCTCCTGGTGACAACTTCTGAGGGAGAGCCTGGTCCACCATCGGATCTGGAGACGTACGCGTTCGGAGAATATATCCTCGTCACTTGGAAACAACCTAAAGTTCCGAATGGAATTATCACAAACTACCAAGTGAAATGCCAAGAGTACAATGGTTCTGTGGTCAAGGAGGCCAACGTTCAACCTTTAGTCTTTAAGAAACTGTTGGACGATTTGGCATTCGAAAAGAGTTATGAACTGGAAGTAACAGCAAAGACCAGCAAAGGATGGGGCGAAAGTGCTAGAACGGTAGCGAAAACAGTCAAGAGATCGGTTCCTGCCAAGCCAAAAGTACCTGAAGTTGTCGAATCCGGAGAGGGTGCAGTCATTGTCACGTATAAGTTCGATGTCGGTGGAGGTTGGACCAGTGAATTTAAAGTCTTGTACAGAAAGAAAGAAGAAGGTGGTGAATTTCAAGAAACTGATTGGGTGGATCATTTCAGCAAGAAAACAGTTAAAATCACTGGTCTTGAGTCAAAGTCGTACGAATTCAAGACTGTTGGTAGAAACGCTGTGGGCACAAGCACCGAGAGTGACACTGTAGAGTTGAAGCCAGAAGCTGCTTCTGTAGTTGGAAGTCCAGTTGACAGTCCTTCTGTTTATAACTCGGATTGGTTCATCACGCTTATGGTTATTTCTGCTGGAACGTTTGTTCTCCTGGCGATTATTTTCATCTACAGACGCTGCAGAAGACGACGCAAGGCAAATTTCAAAGTATCCGAGCACGAGAACGAACCAGAAAAACAGTACATTGAACCGGGCAGCATTTCCACCGAAATCAAACGACGCGAAGATTGGAAAAAGTCTCTTCAGAACCGGCTAGAGGTTGAATCACAAGACAGTTTGGATGAATACGGAGGAAATACGCCATATTTTACCGAAGAAGGCTCCTTCGTAGGTGACCTTACAAAAGGCAGCAACAGAAGATCTATTTATGATGAAATATCTAGTCCTGCTGTCTAA

Transcript

BRAKERNUST00000042054

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8VIW9	Fibronectin type III domain-containing protein OS=Acropora millepora OX=45264 PE=1 SV=1
Q8AV58	Protein sidekick-1 OS=Gallus gallus OX=9031 GN=SDK1 PE=1 SV=1
Q0E9H9	Cell adhesion molecule Dscam1 OS=Drosophila melanogaster OX=7227 GN=Dscam1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000412 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00047 all species →	ig	Immunoglobulin domain	Domain	Interproscan
PF13882 all species →	Bravo_FIGEY	Bravo-like intracellular region	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013151 all species →	Domain	Immunoglobulin	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR026966 all species →	Domain	Neurofascin/L1/NrCAM, C-terminal domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170 all species →	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000042054.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.