Gene detail

Detailed information of BRAKERNUSP00000042071.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: PFX19898.1, Synaptotagmin-like protein 4 [Stylophora pistillata]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000042071

ATGATGAGACCGTTACCCAAATTGTTTGACAAAAAAGCCAGCGAACCAGAAGAATCTAAGATAGAGGCAGGTGAAACTGTGGAGAAAACAAAGGTAAGCCAGGAACAGGTCCTTTTGACTTCAGAGTCTAGATCGCACGAAAATCTAgcatttgaagaagaagaacagcACACAGAGGCTAAAGACATCTCCATGGATTCCGCAACTGCTGTGGCCACCACACTTGAGGCCACTACGAGAGAGGAAAGTCAAGAAGTTAAGCAAGCTGAGGAAAGCGGAAATGATTCTGGAATTTCAGAAAGTCACCTGAACGGAAGTGACGTCACAAAAGTGGATGATACTAAGACAGGTTTGAATGGTGTTGAAAAGGAAGAGCCCACTCGCGATATGCAGCCAGCACTTAAATCCATCGGTTCGTTGGCAATTGGAATAGCGTCATTTAGTCCTCCTGAAATTAAAGTTGACAAGCCAAAGACGCTTTTCTCGGTTGCTGAGGGAAAGAGCACTTCAACAGGCGCTTCTCCCCAGTCCCCCAGAAGGAAAACTGATCATGAAATTAAGAAGAAAACTTTGTCTCCTTTCGCCGACACCAAACGCCGCCATAGTGACTTTGTCTCTGCGCCGATCTCGATTAACGAAGAGTTAGCTAGAGAGGATCTCAAAAAGCGCGGATTCAACCTAGTCAATAAAAAAGACGAAACTGACAGAAAAGGATCAGTACCGGAAGTTGTAAGCAGCAGCCGTGGACCTCAGTGGTCTCCAAGACTGGAACGTAAAAAACAGGATGACgccaagaaaacaaagaaaaaagaggagagGAGAAAGACCTTAGCGGAGTTGGCTTTGGAGGCTGGTTACACGGTCAAAGTCGAAGAATCACCCGCTGATACCCAAGTTCCAAACCAAACAATTGAAGTTAAGAACCAGACGAATGAGGATGAAAACAAGAAGAATGAGGAAACCCATGAGCGTATACTGAGTGAACATGGCCATGAGCATTACAGCGGCATACCAGTCACGGGGGAGTTGTACGTGAGCCTTCGATACGATATGCAgtccaccaagtttgaagtaCAAATTCACAGCGCCAACAACCTCGCATGCGCAAATCCTAAGAGTGGCTCTTCAGACCCTTACGTCAAGACATACCTTCTGCCAGACAAACGCAGTAAGcggaaaacgaaaacgaaaaatgACACTCTGAATCCCAAGTACGATGAAATCCTGGAGTATGTCATAGGCTACGACGAGTTGTTGACGAGAACTTTACAAATGAGTGTGTGGCACAAAGTTATTGGGCGAAACGATTTCCTGGGAGAAGTCAGAATTCCAATGAATGAGTTCATAGAATCGTGCGGCAACTCACTTCAACAGTCCATCTCCAAATGGTTTACCCTGACCGATCAGAGTGACGTAACAGATGGATTGCCGTCAGTTCCGTGTGAGTTAGTATTAGCATTGAAGTACGTCACAGCTGACAAAATTAAGCTGAAGAAAGGCAGGAAAAAAGGTGAATTACAGATTCATTTGCTTGAAGCCAGGAATCTACCAGGAATGGACTATGATGGTATGTCGGATCCGTACTGCAAATGTTATTTATTACCAGACAAGAAAGGCAAATGGAAAAACAAGTCACCTGTCATTAAACGAACCTTGAACCCGACTTTCAACCACAAGTTTTCTTATGAAGAGCTATCTCTGGACGATCTGAAAGAAAAAGTCCTAGAAATCGTCATTTATGACTTCGACCTGGCTTCCAGCGATGAATTTTTGGGCGGCGTTCGGTTAGGACTGGGTACAAGTTCCAACGAATGGGATGACGCAACTGAAGACGAATGCCAAATATGGCAAACGATGTTGAGTAGGTCAAATGTTTGGATCCAAGTCGTCATTCCTTTAAGGTCAAAGTCACACAAGTGCAAACTTGACCTTGGTCTTGTAGTGGACACCACCAAAAGCATTGGCAGGAGAAACGTCCCTTTTTTGAGGAATTTCCTGAAGAGACTCATCCAAAACGTGGGAGTCTCTCAATATGGAAGCCATGTCTCATTTGAGACGTTCGCAGCGAACAGTATCCTTCACAACAAGTTTGATGATCCATCTTCGTATAGCAGTGCTGCGTTGAACTCTTTGATCAACAAAGGCGTTAAGAAGCTGACCAAACCAACCCGTTTGGATTACGCATTATTCAAAGCCGATAAACAAATGTTTACTGGTGAGGGTGGTGACAGGGCCGGAGTGAGCAGTGTTATGGTGCTGTTTACTGACGGAAGATCCCATCCAACAACCACAGATTATTCAAACGCCGTTTCTTCTTTGAAGATCGTCAATGCTTTAGATATCGGGCTTGATGCCACGAGGGTTGCTTTCATCCTCTTTGCTAGAAATGCCATGGTATTAAATACGTTGAATGACAGCAAATATCAGACCAACGAGGCCGCCCATAATCTCATAGCAAACGTGTCAAGCTATCTGGGAAACAGGACGTTTATCGACAAAGCCTTGGAAGCTGCCAATGAGAAACTCTTCACCCCGGAGGGAGGATCCAGATCTAATGTGCCAAAAGTTCTCATTCTTTTTACGGATGGAAAGACTCATTCCAGTTCAAAACCCTTTGAAGAAATAATCCCTAAACTCAAGGACAAAAACGTTCACATCGCCGTTGTTGGAATTGGTAAAAAGGTTTGGCCAGGACAGCTGAGGAAAATTGGAGATGATGTGTACTTAAAAGATTCTTTTGACGACTTGGCTGATTTGTTCCCTGAAATGCTGAATGAAACATGCAgcGCAGATGGCAGGTTTTCCCGCTGGAGTTCATGGTCTGAATGCAATGTCTTTTGCGGCGAAGGAGTAGAAATTAGGACGAGAAATTGCACCAACCCTCCCCCTCAAGGGCATGGAAAAGATTGCGTGGGAGCTGCCGAGGAGATCAGATCATGTTACAAACCTCCTTGTCCAAATCTTGAAGCTATTTTCTCTTTCCTTAGCGAACCTTCTTCTGGCACATTGGAGGAAAAGTGGACACCATAA

Transcript

BRAKERNUST00000042071

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96C24	Synaptotagmin-like protein 4 OS=Homo sapiens OX=9606 GN=SYTL4 PE=1 SV=2
Q8VHQ7	Synaptotagmin-like protein 4 OS=Rattus norvegicus OX=10116 GN=Sytl4 PE=1 SV=1
Q9R0Q1	Synaptotagmin-like protein 4 OS=Mus musculus OX=10090 GN=Sytl4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000239 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043567 all species →	Domain	Synaptotagmin-like 1-5, C2B domain	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45716 all species →	BITESIZE, ISOFORM I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0042043 all species →	Molecular Function	neurexin family protein binding	Interproscan
GO:0070382 all species →	Cellular Component	exocytic vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000042071.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.