Gene detail

Detailed information of BRAKERNUSP00000044109.1 in Montipora cactus

Genomic Location: BLFO01003983.1:262898...273295
NR annotation: XP_044184648.1, coilin-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERNUST00000044109

ATGTCAGGTCTCGTTAGGATTCGGCTAAACTTTCAGCGATATCCCGAATTTCCCGAGATCAAAAACTCCTGGTTCTTGGTGGATACTTCAACGTGCCGCACGATCGCCGACTTAGAGTATTTAGTAAAGAAGAGATTCGGATTATTGTCAAACAACACTTTGATTAATATTTTGCTTGATGACTACCTTCTGCCGTCACAAGAGAAAATTGAGATAATTCAGCACAATGATAACCTAAGGGTTGAAATAGAAAAAGTTGTTACCAAGAAGTCAAGGGAACAAGTCAGTAACCAAGgttctgagaagaaagtgaaaagaaaacaaagaaacacacaTGAATGCGATGCAAGGattaagacaaagaaaagaTTGACTGACAAGAGCCCCATACATTCAACAAGTTCAAATGTTTCAGCAAACAAGACGTGTGAAACATTACAAGGAAACTCATTTAAAAGTTCCGAAAAGGAACAAAATCCCAGTCATGtaggaaaaagaaagaacactGTGGAGCTTTCAAAATCAAACACCAAGAAAAGCAAGACAAGTGGAATTGTCAACTTCAACGATTGTTGTACCATGCAAAATGATTTGGACAGTGATCCTACTTCCTGTGAAAGTGACAGCTTTACAGAATCTACATTAAAGCGACCcattaaaagaaaacagagtGATAAAAGTTTGAAAACTCTCTTGGtggagaaaaagaaagcaactgTTAGGGAAACCGGAAATATTCAATGTACTGGCTTAAACGTTGATGGTAGCTCCTCTGACAGCTCTAACTCAACAGAGACTATGTCAAAACCTaatagcaaaacaaaacacaaaattgGCAATGGTAAACTTAATGCTGAGAAACGAAAGACAACCGCAAAGAGAACGGCAAAGGAATTGGTGGATAGCAAAGATGAGCTAAATACTGATTCAAGTTCCTCTGACAGCTCCAGCTCTACAGAAACTAAGTCAAAACCTGAACCCAAGACAAAACACATCattagaaatttgaaagctaatGCTGAGAAAGGAGAGGTGACCCTGTCACAAACAGGGCAAAATCATGGAAAAATAGGAAGTGATTCCAGTTCATCTGAAAGTTCCAGTTCAAGAGTATCATCAAAATGTACAAGTGAAAAGAAGCTCAAATCTGGAAATTTCAAAGAGCTTAGtgtgaaaagaaaagcaaccaAATTAggtgaaaaagtaaaaaatgctGATAAAAATAACAAGGGAGCGAGGTCTGTAAATGGAAGAACTGCCAAATCATCTATCGTAGTTTTGCAAGgccaaaacaaagggaaagatGTTTTGGAAGGAGAGAGTTCTTCATCTACCATTGACTCCAGTGAATTTGAGGAGTTAGCTAATCTTGCATTGATGGAATCTAAGTCCACATCATTGTCCATATCATCATTGTCCACATCATCAACGTccacatcatcaacatcatcatctttGCCGAGTTCAGCGCCTTCAATTCAGAAGGTGAATTCCAAAGCAGGTAACATCCAAAGCAACAAGTCCCAAGATGAGAAAAGGAAAGATAAGAATGTGTTGTCTTTGTCAACATCATTACTCCCATCTGCAATGCCAACATCATCATCAAGTTCTCCACTGGAACCTCATAGACGGTACTCCTGCCCCACAACTGACAAAGTATCAAAAAGGCATCTTTCAAaggattttaacaaaacaacatcACCCTTAGCTTTATCTGTTACACCTACTGGACAGGGAAGTTATGAACAGAAGACACCTGGACAAGGAGGAAGTGGAAAGCTAAgcTCCAGCTTCTCAGCCAGTCACATAAGATTTGATTCAGATGAGGACGACATTGAAGAGCAGCAAAACGATGACTCAATGCACAAAAACACTGATAGCACTGGAGAAACCAGGCAAAATGCTGTTATGGCAGACGGTCAGTGTGAGCAAATCGACCAAACCATTTCCAGGAAGGATGTTGAAAGAAAGGAACCTACTCAGCCAGATTACACTTCTTGTCCGCCGCTTCATGGCCCTCCTCGAGCTGGCGACAAAATAGCGTATAAGAAAGGTTCTGTGATATCTTATGAGGCAAAAACCGGTGAGGTTACCGTGGAACTCACAAAAGATTCACTGAAGAGGACCCAAGGTGACGGAAACGTTAGTGGAAAATTCGAGTTGGTTTATGAAGAAGAGGAGGGGGAGGAGAATCAAAAAATGGCAGAGAATGAACAACTGGAAACACAGGTTGTGGTTCCCTGGTTCTCCATGCTGGAGCCCGTGTTGGTTGAAGACTAA

Transcript

BRAKERNUST00000044109

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007144 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15862 all species →	Coilin_N	Coilin N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024822 all species →	Family	Coilin	Interproscan
IPR031722 all species →	Domain	Coilin, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15197 all species →	COILIN P80	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0015030 all species →	Cellular Component	Cajal body	Interproscan
GO:0030619 all species →	Molecular Function	U1 snRNA binding	Interproscan
GO:0030620 all species →	Molecular Function	U2 snRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000044109.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.