Gene detail

Detailed information of BRAKERNUSP00000044714.1 in Montipora cactus

Genomic Location: :...
NR annotation: XP_029213827.2, uncharacterized protein LOC114977326 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERNUST00000044714

ATGGCAGAGAGGTTCAAGTGGGATTCAGTCCTTTTCCTTCAGACCAGCGGGGTTAATTTTGTGCGGAAATGGGATAAGAAGACTCTTCCACTTGATTACATAGCTGAAATCAGTGAGAAAACACATATTGGAGCTTCAATACAgGAATTTACGGTGTCAGACGCCTTCTCTTCTGGACCTTACAGAGTCGAAACATTGACTGGCAACGAGCAACGCAGATTTGAGATCAAAGGTGAAACATACTCCACACCCTCCCCTCCTAGCACAATGTCTCCTTCCTCTTTTGTGTTGGATGGGGAGACAATTTACTTGTGTCCGAATGCAACTGAGAATGCAACAGTGCGACCAATTACCACATCTGTACCAGGAATCGAATCCTTCACTATCAACTCTAATTCAGCCAAATTGATTCTCAAGTCGCCATTGGATTACGAGCATACAACTAGCTACACATTGACCCTAAAAATTACAGACATAGGGAAAGCAAGCCAACCCTCTGGAAATATGACGATCAAGGTGTTTGTTTTGGACTACAACGACCACTGTCCAGTCCTTCCCAGTGTTAACTATGACCTCACACCAATTCCACCCCTGCAAAAAGCACCTTTCTTCGTTGCTATAGCAACAGATGGAGACAGCGGATTAAATGGAAACTTTTCCTACAAGAGAAGCCCTGTGTTAcaaaaaatGAATGGGTCTGACTATGTATGGAGTAACAAGACAACAGACTGGACATACCATTATTACCTCTTTGCTGTGGATGGGGGTACACCAAAGCGAGGCGACAGAATACCGCTGACCATCACTTTCAATGCCACATGCCAGGAGACAGGAGAACTCTTTGTCAATGAAACCAGTGGGGAAGTGTTTTTTAGAGCACCAGACGTGACGGGATCGGAATATCCCAGAAATTCCACGGTCAAACCAAAGTGTCGCCGATGTAGGACTGGTTACTACTGTGCAGGAGATGGAACGGAGGAAAAATGTGGTGTGACGTCACCAACAGAGTTCTCGTTTGGAGGAGCACCAAACTGTAGCGCATGTCCAGAGGGATGGTTATGTCATAATGGCACTGCACTTCCATGCCCAGTGAACACACATGGCAAATGTAACTCAACTTGGTGTCCGCAGAAGTGTTTCCCCTGCGACCCAGGCACTGTTTGCCGGGAAGGAAGGCAGTATGAATGTCTTGCGGGGACATACAGTGATGGAACTGGTTTTCCGTGTAAGATATGCCCACCAGGAAGCTTTAACAATGTATCAAGATCTAAGACCTGCCATTGCTGCAGGTCAGGCTACAGTAGCACTTACATGAAGACATCTTGTCGCGCATGTCCCTCTAACGAATACGCTGAACAGGGCACTTTTCCCAAATGCGCGATGTGTCGGACCTGTATCAGTAAAGTGAAGTGTCCTTGCATGGGAGATCCTTGTTTTTCTTCAGTTCGTTGCGTCAATATTGGAAATGGGTCTTTCGACTGTGGAACTTGCCTGATGGCTTTGAAGGAGACGGCAAATTATGCAGTGACATTAATGAGTGTGTCTTGGCAAACCCATGTTATGAGCGTAGTCAATGTGAAAACCTGTCGCCTGGATATCGGTGTGGAGGCTGTCCAGAAGGTTACCGTGTGCAGAGATGGTTTTGCTGGTGATGGGGAGGAATGTGAGCTAGATGCAGATTTGGATGCCATTCCCGTGAAGGGCCTCAGTTGTACATTACCTAATTGTAAAAAGGATAACTGTCCTGCTGTACCCAACACGGGTCAGGAAGATCACGATGATGATACCGACGGCGATGCTTGTGATGAGGATGATAACAATGACCTAATTCCCGACAGAGAGGACAACTGTATTTTTGTCAAGAATCTTGATCAACCAGACAGGGACAACGATGGAGTGGGCGATGCGTGTGATAACTGTGTGTCTGTACATAACCTAAAACAGACGGACACTGATGGAGACGGCCTTGGAGATGCTTGTGATCGTGATCAGGATGGTGACGGTACACAATTAAACTGTTATGAGTTCAGGGTCAGTCCTGTTTGA

Transcript

BRAKERNUST00000044714

Protein

Uniprot

Uniprot term	Description
Q03350	Thrombospondin-2 OS=Mus musculus OX=10090 GN=Thbs2 PE=1 SV=2
P07996	Thrombospondin-1 OS=Homo sapiens OX=9606 GN=THBS1 PE=1 SV=2
P35441	Thrombospondin-1 OS=Mus musculus OX=10090 GN=Thbs1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02412	TSP_3	Thrombospondin type 3 repeat	Domain	Interproscan
PF00028	Cadherin	Cadherin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028974	Homologous_superfamily	TSP type-3 repeat	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR003367	Repeat	Thrombospondin, type 3-like repeat	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10199	THROMBOSPONDIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan