Gene detail

Detailed information of BRAKERNUSP00000048488.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_044178761.1, V-set and immunoglobulin domain-containing protein 10-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000048488

ATGGCGAACGATGAAATTTCTTCGTTCGTAAGTATGAAAATCCCAGAGCTGCAGAACGTCCTAAAGGCGAGAGACTTTCAAATAGCTTTGGatagaaagaaaaggaaaaaggctGAACTGCTGGAGCTTTGCAAAAATGCAGCCGAAATGAAGATGCCAAAAGTTGATGAAGAAATAGAGCTCAATTGCAAGGAAGACTTGATCAAATCGAAGATCATCCTGCCAGGAGGAAAATTACTTCCCCATCCACTTTCGCTTCAGTTTTGGACCCATAACTTCACTAACATTCCAGGCTTCAGGTTTCCTGACATTTATCATTATCTGGTTGGCCTCCCCATAGGCAAAATCCAACCAACCTACAGCAAAGAAGTGGCAGTGGAGGGCTCCGAAGTCACTTTAGAGTGTCTTGGTGCTCATAAATTAACATTACAGCCTATAGATACCACCACACGGTGGTTCAAAGACAGCAAAACTGTCGAGTATAACGACAAGATAAGAAACGAATGGGTGACCCTGGGAGGAGAATGGACGGGCTTTTCTTTGATCATAAAAAACGTTTCTAAGGAAGATGCTGGTCAATATCGATGCGAGGGGTATATTTTCTCAGCTAACAGAACATTGAGAGCATCAAGAGAATTGGAAATATTTGAGAGAGGCCAGATCGTTCAATCGACGTCTTACGTGGATCGTTACCTATCAGATCATGCATCTGTGCCCTCCTTCAGTGTTAGAACTGTTTCTTACAGCAAGTGGAAATCAGTTGATGTGGAAGCTCCGGATACTGACCCTGCTAAGTCTGACTTGAGTGAAAATCCATCTGCCGATCTAGATGAGCTTGTTTCTTGTTATCATAATACTCTAAGAGCTGCCGAGGATACGAGCGTTCCAACAAAAACTAAAACCATTGTTGTGCGTCCGCGTGTTCCACGGTATAATGATGATAACACACAGGTAAAAAAGGCTCGTAGACAAGCTGACAGAAAGTGGAGACGATGGAAATCGCATTCTGATTTCGCTTATTTCAAGGCCAAAAGGAATGCAGTCACTAATCCTTTGAACAAAGTGCGCCGTGAGTTTGCTGttgattttgttgaaaactATCTCGAGCTAGTAAGCGTTTGTTTAACCAGCCGCCTGATGATGGTTTACCACCTAACCTTCATGCTCCTTCTTTCGCCAATGACGTCGAAAGTTCTGAACGTCACAGCTTCACAAACAAATGTCACCTTGAATGAAGGAGCTACAACAACGCTGCAATGCAATCTGACATATTCAGAAGCAATAAACGTTTCGATATTCTGGCTGTTTGACGGAAAACCCATAAAAGCTGAAGCCTATCATGAGGGAAATGATCAAGACTTAAGTACCAAAAACGTAGATCGAATGGCGCTGAAACTAAAGCACGTGACACGCCGACAGGGTGGCACATACTCCTGTGGTGCACTGTCAGCGGATCTTCGAAGATCACAAAACATTTCTGTCAAAATTAAAGACGCAGAGGGCCCAAAACTAGAAGTAGAGGGAAAAGCAGATCAGGTTTTGACAAAAGGTAAAAATGGTACGTTGGTTTGTGTTGCTGTTTACCCGGCAGCATCTTTCGTGGACATATTTTGGACTTTTAATGGTAGTCGTCGAATACTCAGCAATAATGGAAGCGGAAAATATGAAGAGAGCAAATGGTTTGAGCAGGCTTCGAATGAAAACATCAAAAGACGAAGGCTCCGTTTGATCATCTATGATGTAGGATTTAGTGACACTGGACAATACGCTTGTGTTCTAAACACTTCACATGGTTTGCGGCGGAAAAACTTCAGCATTTTGGTTACcaaggaaaaaaacaATACAACACCTTCTCCGAGGCGTCTCACAGATGACAGAAATCCTGGTCCTATTGGTACAACACTTTTTATTGGTCTTGGTCTTTTCGCTGGATTTTTAACAACAGTCATAGTTTCTTTCAAGCTCTTACGAAGGCGGACAAGGGTGCGATACATAGAGTCAATCATATCTTCAACTGATGAAGACCAAACAGAATTCGACTACGACGTATTTGTCACGTACAGTAGAAAGGATTGCGCCTGGGTTGACAAAGAGCTCTTACCTCTCTTCGATAAGAATCAAGTCAAGTATTGCGTGGATCATTTACATTTCCAACTCGGCAAAGCGTTCGTGGAGAACATGGTAGAAGGAGTCTACAATAGTCGCAAAGTCCTGGTGGTTTATTcggtgaatttcaaaaacagtaAATACTGCAAACAAGAGTTATCCTACGCCTTGCAGCGTAGCTTTGATAGAAGCGATTCGGCTGTGATTGTGATACGAATCGACAACACCGATCCTAAACAACTCCCCAAAGCTCTAAGAGCGAAGACGTTCTTGGACTACTACGACACTGTGGAGagaaaaggatggaaaaagAGACTCATCAAGCACTTAAAAGTAACAACGAAAAGATCGAACCATTTAACAGGGACAGCGGTTTGA

Transcript

BRAKERNUST00000048488

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68Y56	Toll-like receptor 4 OS=Sus scrofa OX=9823 GN=TLR4 PE=2 SV=1
P58727	Toll-like receptor 4 OS=Felis catus OX=9685 GN=TLR4 PE=2 SV=1
Q9WV82	Toll-like receptor 4 OS=Cricetulus griseus OX=10029 GN=TLR4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000113 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00047 all species →	ig	Immunoglobulin domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13676 all species →	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR013151 all species →	Domain	Immunoglobulin	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR015621 all species →	Family	Interleukin-1 receptor family	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11890 all species →	INTERLEUKIN-1 RECEPTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01530	E7.6.2.1; phospholipid-translocating ATPase	EC:7.6.2.1	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.