Gene detail

Detailed information of BRAKERNUSP00000049229.1 in Montipora cactus

Genomic Location: :...
NR annotation: XP_029182934.2, protein SMG7-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERNUST00000049229

ATGATTGCACAGCGGAATGGTGATCTAAGATGGCGCCGATCCTTGGGTCGGTGCCTCAAGTTTTACGGTAGCTTTGATGATTTCACTGTTGGAAGTGAGGGTTGGCAATCCAGACAAAGATTACAAGATCTATACAAGAGCATCCTCTTAACCGATCTAGAATCTGCATTAGACAAGAAAGTTGAGCAAGACCTGTGGAACTGTGCCTTCAAAAGTCAAATAGACTTCTTACGGCAACAAGCCAAGGAAAGGAAGGGTACTAAAAAGGTTGAAGTCCAAGCTGTATTGACTTTATTTCTTGAAGCTTCCAGTGGTTTTTACATTCAGcTTTTACAGGAGTTGTGCTTGACATACAGGCTAGATATACCAGGCCATGTCAGATCTTCACAATTAGGCATTCTTGAAGAAATCAACGGCAATAATTGTGTGACAAAGAAGCCTCATACTCAGTCATGTTACTACATCTGCCAAGACTGTTTGGTGCATTTGGGAGACATAGCTCGGTATTGTGATGACCCTGATCAGGCTGAGGTGTTTTATCATCATGCTCTTGTGTTAGTTCCTTCAAATGGCCAACCATACAACCAGTTGGCTATACTAGCTAGTGGTAAAGGAGATGAACTGGGAACAGTGTACTACTACTGTCGAAGCATTGCTGTAAAGAATCCATTCCCAGCAGCATCCACAAATCTCCACAAGACACTGAGTAAAGTTGTTTCAAGGCATAATACAAGAGATGTCACTCAAAACATATCCAAGGCAGAGTTGGGCCACATCTTCCTACAGTTTCATGGTCATGTTTATCTTGTGCAAGATCTTGAAGAGGCAAAGGTTCTCAAAGATTGCATTCTTGTTGCTTTGAAAGGCATACTGAAGCAGGACAAATGCACTTCCAATTTCCTCATTAAACTGGTGTCCATCACTTTGTTTGTGCTGTGGAATGTAAAAACTGGTGGAGCAGATGAACTGGAAGAGTTTGACTGCATTGGCAAGGATGAAGAGGAATGTTTGAAGCTGACTCTGAGCTTTGCAGTGGAATTGTTTGATGTGCTTGTACTGAGTGCCTGTGAGAGTGGGCCCTCAAATGAACAGTCTGATGTGCTTCCAGCTCTCAATTTGCTGTGTCAGTGGTTTGCAGCTGCATCCCCTAACACCTGGAATGGAGATATTCTCAAGAAAGCAAAGATTTGGGAAGATTTTGCTGCCTTGCTTAATCTCTTACAAGTGACTTACCCTCATCTGCCGGAGAAAACAGATCTTCCTCTGTATGAAGACTGGGAACTTCAGTGCTTTCTTCCTCTTCGAATCACCCAAAGgaAACTGACATACAGCATGAAGAGGACAAAGCCTGATGATGAAGTTGCTCACAGAGTTGGCAGACTTGTTAGGTTTGCAAATCGGTTGGTGACTAGCACTCCTTGTATCTTATCCAAAGTGGAAGATCTAGCAACTGGACTGtcccaattttctttgaagGTCAACACCTCGTCACCGATTGAGGAGATCTCAGCCCAAGAAGACAAATTTCCCAAGTCACCTCAAGACATCGATTTAGAATCAGCAGGACAAAAGCTGTTGGCTTCCTTGCCCACCTTGAACAAGgcAACACCCGTAGGAACACCATTTGCAGAGACAAGCTCGCTATTCAAAGGTCCATCAGATGTCGGCCAGTCGGCAGCTTCATATGTAGCACCGTCTCCCTCCACAGTAGCTCAGTATTCACTTTTCCAGTCAGGGTGGAATGTACCCCTTACGTCCGCGGCTCTTGCACATCAAGATCAGTCATCCGGGAGAGCTGTCGTTAAGCCACCAAATCACCACCGTGCCACTGTAGTGGACCCCTTGGCTGGGTCAGGCGGAAGCACCGtatacccacccaccctccCATCTCCCCAAGCTACAGAGAACCGACGGCCTACCAGCTTTGGAACTAGTTTTCCTTCAGCAGGAATGCAGACCAACTACGCTTCTCCGTCCCAGTCTCCATTTGGTGGGTTTGGGTTTGGTGGTGGCTGGGTGGGCTCGGGAGTCTGGGCTCCAAACGGTGCCAGCGGCGGCGGAGGATCAAGTCCCTCTGGGGCGCACAACTTGCAGTCTATCTGGGGTTCAGACTTCACTCCTTCTGAAGGCATGTCACCGCTACAGCAGCTACTGCAGGAGCAAAAGAAACAGCAGAAGGAGGACACTTGA

Transcript

BRAKERNUST00000049229

Protein

Uniprot

Uniprot term	Description
Q5RJH6	Nonsense-mediated mRNA decay factor SMG7 OS=Mus musculus OX=10090 GN=Smg7 PE=2 SV=1
Q92540	Nonsense-mediated mRNA decay factor SMG7 OS=Homo sapiens OX=9606 GN=SMG7 PE=1 SV=2
Q1LVF3	Nonsense-mediated mRNA decay factor SMG7 OS=Danio rerio OX=7955 GN=smg7 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10374	EST1	Telomerase activating protein Est1	Repeat	Interproscan
PF10373	EST1_DNA_bind	Est1 DNA/RNA binding domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019458	Domain	Telomerase activating protein Est1-like, N-terminal	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR018834	Domain	DNA/RNA-binding domain, Est1-type	Interproscan
IPR045153	Family	Est1/Ebs1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15696	SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000184	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0005697	Cellular Component	telomerase holoenzyme complex	Interproscan
GO:0042162	Molecular Function	telomeric DNA binding	Interproscan
GO:0070034	Molecular Function	telomerase RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14409	SMG7, EST1C; protein SMG7	-	Messenger RNA biogenesis	ko03019	deepkoala