Gene detail

Detailed information of BRAKERNUSP00000049285.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029193355.2, LOW QUALITY PROTEIN: calcineurin-binding protein cabin-1-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000049285

ATGTTCTCTGGTGATTCAGGACATTGCGATGGAGCGACAAGGTACAAGGACATGGTCTCGGTAAGAGAGGAGAAAGATGCAATGGAGGGTTTTTTGAATACCAAACCTGGTTCCCCCCATGTGGTCAGCTTCAGGAGGTGGCTCAGAGAGGTGTCTGTGGAGGCCTTTTGCACTATGAGGGACCAAGAGATCATACGCAGTTTGGAAGTGCCATTGCTACATGTTGTAATAGCCGTCATTAGTGCTGACTCTACTTTATCAGGGATTCTGGGTGCTTTAGGGGAGGTGCTGTTTGCTGAGGCTTATTGCGAGGGGTGTCTCAGCGTGGTTAGACTTAATGCGCAGGTGTTTGATGTTGGAGCGTCAAGGGAGTGTGCACTGTTTAAGTCAGAACAGACTCAAACCAAAGGCAAGAATCTTTTTGTGTGCAGTGTGTTGGATGACGAAGAGAGCAACGAGATACAAAAAGAGTTTGTGAAAGAAGCTCTTCATCTCAGAGAGGAAAGGCTTAAACTTGTTGAAGCAGATAGAGCCCCTCCTCCACCATATTCACCTGTGAAGCCTTTGACTTCACACACGTGGGCAAGCCTTGGTGAATGCTTTATTGCTCTCTATGATCATCTAACATCACAGGATAATCCCCAGCCACTTGGCCGCAGGGTTGACTTGGAAGGATATTACAAAGCAATTGTCACACCAGatatctCCATGTCATATAGAGCTTCTGTTGTTAAAGTGCCTGATTATTCCAGCTCAAGTTTCTCCACAGAGGGTTTTGCAGTCTTCAAGAATGTTCAAACAGGAGACAATCATGATGAAAAGGGAAAGAAGGGAGCAAAGAGAAAGAAGCCGCCTCCAAGTGCAATAGAAAGCGACTTTCTTCCAAAGAGACGTTCAGCACGGGTcagaacaaacaaaaagaaggaGGAAGAAGTTAACTACAAAGAACTAGTATCTTCTTTTCTTCCTTCACTATTCAGACCTGCAGTGAGCATCGATGATGACAGTAGCCAAGATAGCCTGTCAGATGGAACCTTAAGTCAAAGGAATAGCCAGTCACTGATGGTAGATGGTAGATCTAGGGAAGGTGCTTTTACTGATAGAAGCACTTATGATGAAGTCATCTCAGGTGAAGCCGAAACTTTGGATATTTTAACCTTTGTTAAAGAACAGATGGAAAATGGTGGAATCATTGATTTGATGAATCAGTATGGAATTAGTCTTGCGGCACAGAACAATAAGAAGTGGCCTTCTGCTCTGGCAGATGTCTTCCTGAAAGTCTATCAAAGAATGAGGAAGCATGTTATTCTTCCATCAGAGTTCTTCGGTGGTTCAGTTGTGTCTCCGCTTAGGGTCAGTGGGGTTAGTAGCCAATATCTTGCTACTGATGTAGAGTACCTTCACCGCATAAGCTGTCTACGCAGTATCCATGGAGACTTCACCCTAGAAATGGCCATAAGAGTGAACTGGATGAGAGCCAGGCATCTGATGTTACAGGGTCAAATGGATCATGCTATGATGTACCTTGACAGGTGCTCAAAGCTCTTGACTCTTAAAGTGAATTCAATAGAGGGTCCAACTACCGTCAAGCTTGTAAACTGTAAAGTTGACAACCTTATTACACTTGATCAGGTTCAAAAGAAACTAGAGTCACTGCAAAGGTGCCAGTCTTTAGAAGAGGTTCATCGTCTCTATGAGTCAGGCCTCTATGAAGATGTCGTGCAGTTGTTGATGCCGACTCTTTACCAACCTCAACCTAAAACTAAGGTCAGCGAGCTTGGTATGTCTATTCCTGAGAGACCAGCACAGCTGCTGTTACTGCAAGACTCACTTTTAAAACTCAAGGAGTACGAGCAATGCCTTACATGTTCTGAAGTTGCTCTAAATGAAGCCGTTTCGCAAATGAGTCCGTGCGAGGCCTGGTCTACAACTCTCTCCAGGCTCTTTGCATGTGTCGATAGGAGTATTTTAGAGTGCAGCGATGTGCTGGATAAGATTCCTCAGGACAAACTCAGCAGACTCACTAATAACGTTATTAAGGTTCTGGAAGCTTCCATCGAGGAGAAGGACCACGAAATAGCGGACAAATCCTCAAAGACATGCCCTCCAGTTGCTCCTCCATCTACTGACATTCCAATGCCTGAGACCGCGAACACGGACAGCAATGCAAGCACCGGCGGTGTTATCAGTGATATGCCAGCGAGTAACATGGCACCATCATTACAATTTCTGCGAACTGCGCATGAACATCTTGGCAGGCGCGGATGGTGCTGTAACAATGAAGGAgtgtttttgtttctaaaaGTGGAGGTTTTAACAAAGGAGCTTGCGAAACCAGTCGTCACCGCCAGAGAGATCGCATTAACGTGGAGTAACTCTGCTGTTGTGTTTGATTACTTCAAACCCCCTGAACCACCAAAGTTTGACAGCAAAGCCAACACCATCACCGCCGAGGTGCAGAATCTGCTTCGGAAAATAACAATGGTAATTCCACAGCAAGAACTTGAAGCCATCAGTTTCGAAAGTGTACAGTCGTTTATTGAAGGTGGAGATGAACCAGTGCCAAAATTGCCCGACCATCTATCTGGTGTTAATAGaCCAGTGATAAGTGAAATATTCTATCTACTTGCTGATTTCTTCTTCAAGAACAAAGAATTCAGCATAGCTGACAAGTACACTTTAGCTCAAATGAGACAGAAACAGCTAGGAATGAATTCAAACATAACTTCCAACGACGGGACTGCGGCATCCAAATGTACCATCGGGGGAGTTGGTAAATCACACTCAGGAGCATATGCTTTTGTTGTGTTTATCATTGCCCTGGTCATTGTCTGTTGCCCTCTTACAACTGTTCTGAACTTGTTCGTCGTGCTCTCTGTCAAGAGGAAGCGGCGTCTCCAAACCGTCTCAAACATCGTTCTTGGTTGCTTGGCTGTGACAGATGTTATTATGGGGGCAATAGGAATGCCTCTTTTCATTTTGCAGGGAATCGTGACTCTTCTAGGGAAAGACCTTGACGCTTTTTGCCTTATAAATAGGCAATCCCTATTCGTAATTTCAATACTAGGTCGTGCAACATTCCTTCATTTATTTCTGATGAACGTGGAAAGATACATTGCTATTAAACACTCATTTAAACATATAAGCATTATCACCAAATCTCGCGTTGTCGGATCAGCTGGTATTGCATGGAGCGTCGCGTTGGGTTTGAATTTCCCTCTGATCATCACAGATGACAGCGAAGTTTTTATCACTGCCACCACCATTTTGTATTCAGTGTTTTTAGTCGTGATGATTTACTGCCAAGTCGTGGTGTTCTGTGAATGCCGTCGCCAGGAAAAGCTAATCGCTGGCCAACAAGTCAATGTGGAAGCCAGGGAGAAGTTCTTGAAGGAGAGAAAAGCTTTTAAACTAACCACGACTGTGCTTGTTGCGATTTTAATTTCCTATTTACCAATATTTGTAAGTAGAATTCTTCAAACGTTGTTCTCTTTGTCTGGAACTGCCTGGATTGCTGTTTCCTATGCTTTATGGTTTTCAATGACCGTCAACTCGTTAATTAACCCGATTATTTACTGCGCCAGAACGAGGCAGTTCCGAGTTGCGTTTATTGAAATATtcttaagaaaacaaaatgcGGAAGCTGTGGAACTGGAAGTTCGAGTGTTTGGTTCAAAATGA

Transcript

BRAKERNUST00000049285

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88480	Calcineurin-binding protein cabin-1 OS=Rattus norvegicus OX=10116 GN=Cabin1 PE=1 SV=1
Q9Y6J0	Calcineurin-binding protein cabin-1 OS=Homo sapiens OX=9606 GN=CABIN1 PE=1 SV=1
P34968	5-hydroxytryptamine receptor 2C OS=Mus musculus OX=10090 GN=Htr2c PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002204 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR033053 all species →	Family	Histone transcription regulator 3/CABIN1	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15502 all species →	CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000049285.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.