Gene detail

Detailed information of BRAKERNUSP00000049855.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: KAJ7390946.1, AP-2 complex subunit alpha-2 [Desmophyllum pertusum]
Species abbreviation MCACT · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000049855

ATGCCTGCCGTAAAGGGAGAAGGAATGCGCGGCTTAGCCGTGTTTATTTCCGACATTCGGAACTGCAAGTCGAAAGAGGCAGAAATGAAAAGAATCAACAAGGAACTCGCAAATATTAGAAATAAATTCAAAGgtgataAACAGTTAGACggttatcaaaagaaaaaatacgTGTGCAAGTTGCTGTTTATTTTCCTTCTGGGCCATGACATCGACTTTGGTCACATGGAAGCAGTAAATCTGCTCTCGTCGAACAAATACACAGAAAAGCAAATTGGCTACCTCTTTATATCTGTCTTGGTTAGTGCAAACAGTGAACTGATCAAGCTGATTATTCAAAGTATCAAGAATGACTTGTCCAGTCGCAACCCCATCAATGTCTGTTTAGCACTCCAGTGCATAGCAAATATCGGCAATGATGAGATGGTTGAAGCAGTGGGAAAAGAAGTACCAAAGCTGTTAGTCTCTCCAGATACAAATGATAGCGTCAAACAGTGTGCAGCCCTTTGTGTGTTGAAGCTCTTTAGGCTCAAAACAGACATCTTGCCTCCTGGAGAATGGACATCAAGAATAGTACAGCTCTTAAATGACAAGCACTTGGGTGTGGTCACCTCTGCCGCTAGTCTAATTCAAGGTGTTGTCCATCACTATGCTGATGATTACAAAGGATGTGTCCAACTAGCAGTGTCGAGACTAAGTAGGATTGTGACATCATCATACACAGACCTCCAAGATTACACTTATTACTTTGTTCCAGCACCATGGCTGTGTGTCAAACTGcttaaacttttgcagctgtaTCCTTCACCAGATGATCCAGCCATCCATGCACGATTAAATGAATGTCTTGAAACCATTTTGAACAAAGCACAGGAGCCACCAAAATCCAAGAAAGTCCAGCACTCAAATGCAAGAAATGCTGTACTTTTTGAAGCTATAAACCAGATTATTCACATGGATAGtgaACAAAGTTTGCTGATCAGAGGGTGTAACCAGCTGGGTCAGTTTTTGACACACAGGGAAACCAACCTTAGATATCTTGCTTTAGAAGGTCTTTGTTTAATGTCCAACTCCGAGTTCTCAGCTGATGCTGTCAGAAAACATCAAGAGACTGTTGTTTCAGCACTGAAGACTGAACGTGATGTCAGTGTGCGCCAGAGAGCAGTTGATCTTCTTTATGCTATGTGTGATAAGAACAATGCTGAAGAGATAGTGTCAGAAATGTTGACGTACTTGGAAACAGCTGATTATTCCATCAAGGAGGAAATGGTACTAAAAGTTGCAATACTTGCTGAGAAGTTTGCCACTGACTACTCCTGGTACATGGACACCATCCTAACACTAATCAGAAATGCAGGGGATTATGTCAGCGAAGAAGTATGGTATCGTGTGATCCAGATTGTCATAAACAGGGATGATATCCAAGGCTATGCAGCTAAGACAGTGTTTGAGGCCCTGCAGTCACCATCGTGCCATGAGAATATGGTGAAAGTCGGTGGTTACATCTTAGGAGAGTTTGGAAATCTTATCGCTGGTGATCCACGCTCGAGTCCAATGGTCCAGTTCCAGCTTCTTCATAGCAAGTTCCCATTGTGTTGTTCTTCAACAAGAGGTTTACTGATGTCAACATATGTCAAGTTTATTAACCTTTTCCCAGAGATCAAGGGACACATTCAAGAGATTTTGCGAAGTGATTCTAACCTCAAGAATTCGGATGCAGAAATTCAGCAGAGAGCTTTGGAATACTTGAAACTTAGTACTGTTGCATCCCCTGATGTATTGGCTACTGTGCTTGAAGAAATGCCACCTTTTCCAGAAAGGGAGTCATCCATCTTGGCTaagttgaagaagaagaaacaagAGAAGACTGGAATAGTCGAGAAGGAAGAAAAGGCTGAACCTGctgaaaaaccaacaacaaatgGACAAGTTCCAGTGGCAAATGAAGTGCCAGTGCATCTCCCTCCTTCAAATCCTGCATTACAAGCAGATCTCATTGGCACAGGAAATGCTCCTTTCGTAAACAACTTTGCAGCTTCAGATACTGCGGGTGGAGGGCTTCTTGTCGACGTGTTTGACATCCCAGCAGCAACACCAGCGCCAGTGATAGGAGGTATTCCTACCATTAACCCTGGAACAGAGGAGAATCTTAAAAAATTTGTGTTCAAAAACACTGGCGTTTTGTTTGAAAACGACATTCTCCAAGTTGGAATAAAATCAGAATTTAGCGACACAAAGGGAGCTATTGGTATATTTTATGGCAACAAGACGTCTTCacaatttgttaatttctccTCCACTGTCCACAGTCCTGATGACCTCAATACTCATATCCTTTTACATGCCAGATCAATCTCGTTTCCTGTCTCtatcttctctgcctcctttgtcgttgaggagagagacaaaggaggcagaaaaTAG

Transcript

BRAKERNUST00000049855

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18484	AP-2 complex subunit alpha-2 OS=Rattus norvegicus OX=10116 GN=Ap2a2 PE=1 SV=3
P17427	AP-2 complex subunit alpha-2 OS=Mus musculus OX=10090 GN=Ap2a2 PE=1 SV=2
Q0VCK5	AP-2 complex subunit alpha-2 OS=Bos taurus OX=9913 GN=AP2A2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003821 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF02883 all species →	Alpha_adaptinC2	Adaptin C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017104 all species →	Family	Adaptor protein complex AP-2, alpha subunit	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR013041 all species →	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR050840 all species →	Family	Adaptor Complexes Large Subunit	Interproscan
IPR008152 all species →	Domain	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22780 all species →	ADAPTIN, ALPHA/GAMMA/EPSILON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0030122 all species →	Cellular Component	AP-2 adaptor complex	Interproscan
GO:0035615 all species →	Molecular Function	clathrin adaptor activity	Interproscan
GO:0072583 all species →	Biological Process	clathrin-dependent endocytosis	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0140312 all species →	Molecular Function	cargo adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000049855.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.