Gene detail

Detailed information of BRAKERNUSP00000051764.1 in Montipora cactus

Genomic Location: BLFO01004619.1:638280...653645
NR annotation: CAH3183870.1, unnamed protein product [Porites lobata]
Species Montipora cactus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERNUST00000051764

ATGGATATCCAGAATGTCGCCAATGGAGACACAAATGTTATGTGCAATGAATGCGACGGTCCTGAGTTTACGCAGGAAAGTGTTGACCTTTTGTTCGGAAATGCAGAAACCATTAGAGTTCAGGCCACCAAGGGCTCTATGATAGCTGAGGGGAATATTATTACTTCGGGCAAGGCCAAATCGCAGGAAATTTTCGTTGGTGATATTGGCCTTACTGAAATACCAAGGGAAGACAGGCCAAGACTGGGTCAGCGAAACCTTTTGGTGCAAGTAATGGGCGTAGAAAGTGACCAGCTTGTGCAAGCACCCGTACTAGAAGATGGTGTTGGACCAAATCTAAGTGTTCTATATTCAATGAAAGATTTTGACGTTTCACCCGATGAAGCATGTTCTGAAGTGCTGCAGTGGACGAAAGAAGTGGTTGAAATCTGCCTTTCCAAAGAAGAGGACGgagagcaaaaagaaagcaTCCTTGCTGTATTATTGCTCCTTTTACAAGCAGCCAAGGGTAACGCTCGCTCGGTACATCCATCTTGTAAGGAGTTTCTTTTGGCACTTGAACAGAAGAAGCCTTTGCCAGGGATGGCAGGGATCAACAACGAGCTCTGTGATAGGCTGGTACCTAGGATTGCCTTTGCATGGATCATGAAACAGCGGCCAGACAGTAGACTTTCGCAGCTGTCAAAATTCTGGAAGCCTCGACGGCAACATGGCTGCTGCAGCAAATGCAGACGAGCTGTGATGATGTGGATTCGGTGGAAGTGCAAAATTTGCTTGAATTTCGTATGTTACGAGTGTTATAATGCCATGCTATGTGGGGCTATAAAGCACACTTGTAAAGGAGATGCTGATGATGCAAACCAGGATAATTTCGAAAGAGGATTTACTAATATTGGTCACAACTGTTACATGAATTGCCTGTTATCAGTACTCCAACATGCCCGTTTCCTTGCGGATCTGAAAAAGGCGTCAGACACTTTACCTTCACAATGTGTCGCAATGAGGGCTACTGCAAAGTTGCTTAACCTTGCTTCAGATGTGGACCCTAAACATTTAAAGGATGAAGAATACGAATGCAGCATGGCAGAACTCCTTACTGCTTTAGATTGGGATAACAAACATCAAGGCGTTGGAGTCTGGAATGACACAATGGAATTTTATCAAGCGTTTTTGGAAAAATTGGGTGTAGAAGTAGAGGTTAAATTTGGCCCACACCTGTCGACGGACTACTCCCATGCATATGATGACACCATAAACGACTGGAGTAGGTCAGAGGATAAGAAACCCACACAGCCAACATCTGGTATGAGGAAGAAACGTCCCCTGACTAAAGAAGACAGAGGGAGACTTTTacgaaaacatttcttaaaGGAAGGAACTCAACTTGGCAGAAAAAGTATCTGCGAAGTTGAGGGAAGTAGTTGGTGTGAAGACTCTGAAGGAGCAGATCCTCAAATGGGCCAAAAGTGTGCATTTAGATCGCAAACAATTGGAGGCTACCGGTGCGAAGccgggaaaagtagtccctccTATCTACCACATGGTAATGATGGGCAACCCTGGAACTGGAAAAACAACAATTGCAAGATTAATGGCAGTATCCTTAAGGACGTTGGTATCACGAAGAAGTCAAAGCTGATCGAGGTACAACGCCCAGACCTCGTGGGTAGATATCTTGGTGAAACTGGCGTGCAGACAAAGGCCTGTATAGAGAGAGCTAAAGATGGAGTGTTATTTGTCGACGAGGCATATCGACTTAAGGTTGACTCGGACAAAGATTATGGGAAGGAAGCGCTTGATACTCTTATGGAAGCGATGTTAGGGGGAAATCCAGTAATGATATTTGCAGGGTATCCAGCGCAAATGGAGGATTTCATTAAGTTGAATCCAGGTTTTAAGCGCCGAATAAGATCGAGTTTTCACTTCCAAGATTATACCTGTGCAGAGCTGGCAGAAGTGTTCATGCTCAAGGTCGCGTCACGCGGATTCAAGATTGACGTTTCTATGGCAGAGCTTACAGATGTACTGGCTAAGAAAACCACAGAGGATTTTAGAAAAGATTGGAACGCTGGACTCTGTGACCGTTTGTTCGAGATGGCCAAGGAAAATCTTGATGAAAGATTACTTACTGATTCTTTGTCCTTGAAAACTGATAGCAGTGAGTTATCAAAAATATGTAAGGAAGACATCGACAAGGCAATGGACTCAATTTCAGTATAG

Transcript

BRAKERNUST00000051764

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P27643	Stage V sporulation protein K OS=Bacillus subtilis (strain 168) OX=224308 GN=spoVK PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001708 (this species only) · gene tree & orthology
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000641 all species →	Family	CbxX/CfxQ	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR050773 all species →	Family	CbxX/CfxQ RuBisCO activation and ESX secretion	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43392 all species →	AAA-TYPE ATPASE FAMILY PROTEIN / ANKYRIN REPEAT FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000051764.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.