Gene detail

Detailed information of BRAKERNUSP00000053127.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029200721.2, protein O-mannosyl-transferase TMTC2-like isoform X1 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000053127

ATGCAGAATGATAAATGGAAATGGTGGCATACGGCGACAATTTCCTCTCTGGCGGGACTCCTGTGTTATTTAAACTCACTTTCTGCAGAGTTTGTCTACGATGACAGCCGTGCTATCATCAAAAATTCTGATTTGCTCTCCACTACTCCATGGAGCAATGTCCTGTTCAATGATTTCTGGGGCACACCTTTGACTCACAGTGGGAGCCATAAATCGTACAGACCTCTGTGTGTTGCGACATTCAGGATTAATTACTACTGTGATGGCTTAAATCCATTTGGGTATCATCTGGTAAATGTTCTACTGCACAGTGTTGTTTGCTGGTTTGTGGTGATTTTATCATACACACTTCTTCATGCGCATTTTCCAAGTTTAATAGGAGGGCTTTTGTTTGCTGTACATTCAATTCATACAGAGGCTGTGACAGGAGTTGTTGGAAGAGCGGACATACAAGCTTGTCTCttctttattttatctttaCTGGCCTACATCAGATCGCCTGACGAGACATCTTCAAGGGATTCACTTCTTGGCTGGAGGAAGACCAAGTGGACGTGGATattgttatgttttgtttttagtgTTGCAAGCATGTTGAGCAAAGAACAAGGTATCACTGTCCTGGGAACTTGTGCTGTGTATGAGATCATTGTCATCTTAAGCAGAGGGAGGAAATACTGTCTTTCTGGAGAACTGACACAGGCAAGTGTAGTTATGTGTACAGCTTTTCAGAAAGGAAGTGGCTTACGTCTCCTCTCAGTATTCTGCACTGGAATTGTGGTTTTGCTGTTCCGATTCTCCATTATGGGAAAGCAAGCACCGGATTTTTCTCCATCTGACAATCCGTCTGCAAATTCTGAGAACTTAGTGACACGACTTTTGACCTTCTTGTATTTACCAGCATTTAATTTCTGGCTCCTGCTATGTCCAagaactttgagttttgattggtccaTGGATGCGATACCCCTGGTAGAATCATTACTTGATGTACGCGTTGTgatcattttcttgttttacgGATTTATTGCCACTTTGGGATTTCGCTGTTTCTTTGGATGTATTTGTTTTGTTCCAAGCACAGAAGGGCCTGCTGAgggagaaaaaattaataaatcgCCTCTATCTGCAATGAATAGTaaagaaatgttttcaaagaatgGGAAGAAAGTGTTGTTAAAGTGCACGAATGGTTCACTTGTCTATAAAAACAACAATTTGCCAATGAGAATTTTCAATCATAAAAGTTCTGTTCGTGCTGCACTTGTAGCACTTGGAATTTCAACACTATCCTTTCTACCAGCAAGCAACTTATTTTTCTATGTTGGTTTCGTGGTGGCAGAGAGAATTTTGTACATTCCTAGTGTAGGATATTGTTTGTTGATTGCCGTTGGTGTAGATGTCATCTGGCATGCTTGTAATAAGTGGCAGAAGAAGGTGTTGAGTGCCATGTTATTGTTTGTCATGGTGTTACTTTCTGCAAGAACTGTCATGAGGAACTGGGACTGGCAGAACGAGGAAACTCTGTACAGATCCGGTATCCCTGTAAATGCTGCTAAAGGGAATGCACTGAACtcacaaaaaagaacaaaagaagcaGAAGAGGCCTACAGGAAAGCTCTCTCATATCGCTCCAATATGGCTGACACCCATTACAACCTGGGGATTCTCTTAGCTGAAGAAAAACGCTACAGTGAAGCAGTCCGAAGTTACAAAAACGCCATTCAATTTAGACCAAGATTAGCTGCTGCTCATCTGAATTTAGGCATTGTCTTGTCTGACATGGGGCATCAAGAACAAGCTGTTAAGGTTCTAAGGAATGCCTCAACCATCAGTGGGCATGGCTTGAAGGATCCCAAACATCACGCACACTCTATTGTATCCATTAAGTACAACCTTGGTCGAATCTTGGCTCAAATGGGAAGACTAGAGGAAGCTATTAGTGTCTACTTGGATGCAGTGGAAACTAGACCTTCTCATTATGAACCTCACAGTTTGTTCAACTTGATGGGGGAGGCTTACTCTGCAGCCGGATATCAAGAAGAAGCTGAACAATGGTACAAGGAGTCATTGAAGAGCAAACCAGATCACTTGCCTGCTCATCTCACATATGCCAAGCATCTTAATAAAgttgtatgtacatgtattgtgcaCGCTAGTGATTCTTGCTTCAGTTGA

Transcript

BRAKERNUST00000053127

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DCD5	Protein O-mannosyl-transferase tmtc2 OS=Xenopus laevis OX=8355 GN=tmtc2 PE=2 SV=1
Q56A06	Protein O-mannosyl-transferase TMTC2 OS=Mus musculus OX=10090 GN=Tmtc2 PE=2 SV=1
Q8N394	Protein O-mannosyl-transferase TMTC2 OS=Homo sapiens OX=9606 GN=TMTC2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000850 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13414 all species →	TPR_11	TPR repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF08409 all species →	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR052384 all species →	Family	O-mannosyl-transferase TMTC	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013618 all species →	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44216 all species →	PROTEIN O-MANNOSYL-TRANSFERASE TMTC2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000030 all species →	Molecular Function	mannosyltransferase activity	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000053127.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.