Gene detail

Detailed information of BRAKERNUSP00000054571.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029191500.2, nucleoprotein TPR-like isoform X2 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000054571

atggcggcctccGCGGTAGCTGTGGAAGAGAGTGAAGTTGTAACAGCTTTGTCGCATTCTCTAGGAATTTCTAAGGAGATTCTTGCTAATGTTGCGAGCTATAATGAAGATTCAGCCTCCGTTTTAGGCAGAGTCAAAGCTGTTTTCGATGAGCGGGTCTCCAGCGAGGAAAAATATCGCTTGGACGTGGCGAATCTTCGTCGTGCACGTGTAAATGCAGAACAGCAATTCAGCCAGATTGAAAAGCAGCTTATCAGCTGTAACTCAAAACTTGAGTCTGAGCAGAAGCAACATGCAAGGCTTCAGAAGGAACACGAAGAAACAGtTGCCAATCttgctgaaaaacaaaaaagactacAGGAGGTTGAGAGTATCAAGGAGGATGCAGCAGCCAACTATTCTCGTGTGTCAAAACTGAACGAACAGCTGGAATCGGAGAAACTGGACCTATTATCAGTGGTTGAGAGGAAAAATCAGGAAATAGACAGACTAAATGATGAATGGAAGTTGATGTCTAATAAATTGTCAGAAGCCAATTCTGTTAAGTGTGAGGCACAGGCAAAACTGGATGAAATAGAAAGTCAAGAAACTTCTCTCAAGTTCCGTGAAAAGAGGATTGAACAAGAAAAGGAGcttgttcaaaaacaaaatacttgGTTGAGTGATGAGCTGAAAACTAAAACGGATGAGTTGGGCAAACTGCGCAAGGAAAAGTCTTCCCAAGTTTTGGAACTTCAAACTCAATTGGATGAGACCATTGAAGAGCTGTCTCAGTTGAAGACCTCAGCAGAGGCTTTAAGGGAAAGCAATACAGACATGAAGACCAAAGTTGAAAGTTACATGGACAAGTTAAAGGAGGCTCGTGAACAATTTGCCAAGATGGAAGACCACTTCAAAACAGAACTGACATCACAGTCAAAGCTGGCCACACTTTATAAGGATAGTGCTGATGAGGCAAAGAAAAAGAGTGATGAATTGTTGACAGCATTTGAAgaactgcaaaaattgctcaAAGAGGCTAATGAAGGCCGTCTTGATTCAGACAGTAAGTTGAAGGAGCAAGAAAATTTCCAAGCAGAGAAGACCAAGGAATATGAGGACAAGATTAGCAAACTGGAGAGAGAGTTGGAGAATGCTAACGACTTGCTTGCTGCTGCAAGGCAAAGAGGTGCAGCTCCTCTCACTCCAGCTGAACTGAGTACTCTTTCACCCACTGCGGCTGCCACAAGTTCATTCATGAAATCTGGAATGACACTGACCCAGatctACAGCCAATATGTTGAAGTCTCGGATGCGCTACAACAAGAAAAAGATGAGAATATTAGACTAAAGCAGTACTTGGACCAGATACTTAAGGAAATTGAGGAGAAAGCTCCCATACTGCAGCAACAGAGAAGAGACTATGAACAGGCATTACACAGTGTCGATCAGCTTTCAAGAAGATTAGATTCTGCACTGATTGAAAATGAGGAATCCAAAGGGCATGCTGATGAAGCTGTCAGAAAAAGTGAACATCTGAAGAGAGAAAATGACAGACTGAGGACCTTATCAGCTGATCTCAGTCAACAGGTTCAGGTGCTTTTGAAGGAGTGTGAAGAGGCCAGGGGAGGTGTGGTGAGTTCCGTGGAGAGCATGCAACCAATGTCCAGTGCAGAGGTGACCAGTTCATCACAAGTCATCTCGGAGCATCTTGTCACATTCAGGAGCATTGAAGAAATGCAACAGCAGAATCAAAAGCTATTGGGTGTCGTAAGAGAATTAAGTGAGGAGAAGGAAAAGAGAGAAGGGGAAAATGCAATTGATAGCCTTCAAAAACAGTTAGATGACTCGTTTAAGGAAGTAGAAGGTCTGAAAGAAGCAAGAGAAAGACAGATGAAAATGGTTGAGGCAGTTGTAAGACAACGTGACATGTACCGTGTTCTGCTGGCTGCTAGTGGACAAACCCCGATACCAATCTCAGATGAGGACTCTCCCCTTACCTCCTCTCCGTTACTGCAGCGTTCAGACAAAACAGCAACTGAACTGGAGGAAACTAAACTGGCATTGAAAGAACTGCAAAGGCATTTTGAGACTTACAAAACCGAGAGAGGACAAGTGGAGGGGAAGTTGAGTGAAAAACAAGAGAAGTTGGAGAGTCAAAATATCGAGCTGAATGGCACGAATGCCAGGCTAAGCTCTCAGCTGGAGTTTATTGAAGAGCGATATTCAATGTTGAAGACGAACTCGGAAGCCTTCAGGAAGGAGGCTTCTGCTGCCTCtgaaaagtcccgaaacttgcAAGTGGCGAACAGCAAGATACAGGCAACTCTTGATAGCATATCGCAGGAGCTCACGAGCATGAAAGAGAAATGCAACAAGCTTGAGGTCgattgtgaaaacttgaaagcCGAGAAAGCTCTCATGAAGGAATCAGAGGTTCGCCTCATGCAGGAAAACAAGAGTTTGTTGGAACACCAAAAATCGCAAAATGCTTTGGTCACAAATCTTCAGACTCTACAAAACAATTTAGAAAGATCCGAGTTTGAGGCAAGGACAAGACTCGGTTCTCAAGTTGACACTTTACAACGAGAATTGAATCTGCTGAAAAAGAAACTAGAGTCTGAAGAGAAACACCACAAGGGTATCATCAGCACGTGGGAGAACCGAGTTCAGGAATTACAGTCACAACTCAACGTTGAAATCAAGACTCACCAACAAGCCAGGGATCAGCTATTGACATCAACCCGGGATATTGATTCCGTGCAACTTCGGTGCACACAAGCTGAAGCCCAACTTCAAGCTGCTGAGAAGCGCATTGAGGATATTCTGAATAGCGAGCCGGGCATCTTGAAAGAAGGTGATCAAGAGAGGATCAGGAAAGAGGTGACGGAACAATACACTGTCAGGATTGAAGAATTTGAATTAAAATTGAACGACGCTGAAGCAAAAATCAAAGGTCTTGAGGAACAGTTGCAACACGCTAAGAAGCATGCAGATCAGTTTAAATCGATGTCCGAAGCTAACGAAACGGCATTGAGTGATTTGAACAAGACAAGCGAGGAATTCAGGAGGTCTACAGAAACAAAACTAAACGAAGCAGAGCAAGAAATATCACAGTACAAGACAAAGGTGTCCACTCTTCAAGCTCTCAACCAGGATTTGAATGCCACACGAGCCAAGTTAACGAGAGAAACCGAATCACAGACCAGGAGTTTGCGTGACATGCTAAGCAAAGTCAGGGCTGAATTGGACGAGGCACTTAAGAAAGCTCAGACATCGACCGCGGCAGAAGTGACTGCCAAGGAAGAACTAAAAGAACAAGCTGTTCTGGCTAAAGAGGCCCAAGACAAGTATGAGAGGGAATTGCTTCTTCATGCCAATGACGTGCAAGCATTGACCACCATCAAGGCTGAGtttcaAGAACAGAGCAGTAAATTCCAAGAGATAGAGGACCGTGCAGTTGCAGCTGAGCAAAAATTACAACAACATTTGAGTTCCTGGGATGAGCAGAAAAAGGCAAAAGCTTCAGAGACCAAGAAATTAGAGGCACGCTGCGCAGATCTTGTCAATCAGAATTCGACGCTTCATAGCCAACTAGAAAAGatgaGTGCCCAGCTGGCAGCCAGCAAAGAGTCCACAGTGAACCTCGCCCAACCCCCCAAAGAGGTTATGACAACTGACGGAGCGTCTGAGGGTAACAAAACTGTTGATGAATTGTGGGAAATTATAAGGTTTGTTCGCCGTGAAAAGGAGATTTCCGAGACAAAATACGAGCTGTCACAATCGGAGAGCATCCGCTACCAGCAACGATGCGAATACCTTGAAGGACAGCTACAGGAGCTGCAAAAGAACGTAACTGATCAAAGAACACAGTCCGAAGTAGACTCCCAAACCGCAGCACAGCATGCTGAGATTATGGAAAAAGTTCAGAAACTAAATGAACTGACAGAGGCCAATAAACTACTGACGAGTGAAAAGGAGAGCGCAGATGACACTGTAAGAGAACTGGTGACAAAGATTCAGGTTCTAGAAGCAGATGTGCGGCCACTCAAGGACAACATTCAGTCACTGACGACGCAAAAAGATGCACTATTGGCCGAGAAGACTGCGCTAAAAAACGAGATTGTTCGATGGACTGCTAAAACCAATCAGCTGTCGGAACAGTTCAGGAACGTTGATGTTGACGAGTACAAGAGGATGAAAGAAGAGAAGAAACAGTTTCAACAACAGGTATCCAGTTTGAAGACTGACAACCAGCGAATGAGAACACAGACGGACTCACTCAAGTCTGAGTTATCCAAAACACAAGGAGAATTAGTGGGACTTAAGgCAGTGTCACAAAAATCGGCTGATCAAGTTAGCAGTTTGAAAGAAGAGCATCAAAAGGCAATAAGTAAACTCCAGGAAGAGGTGGAAACGCTCAAGAGTTCAGTTACCGCCAAGACCGAGGAAGTTAACGAAAAAAATAAGACTCTACTCCAGGTTAAGAGAATAGCTCGCCGATACAAGACTCAAGTTGATGAACAAACCAAGGAAATGGAAGACCTGAAGAAGAAAGTGAACGAGTCAGAGCAACAAGAGGGAGCAGGGAAGGCTGTAGGAACAGCAGCGCCATCTGCGGGAAATGTTGATGTAGCAGAATACGAAAATAAGATCAAAGAACTAACCGAACAAGTTAACAACTCGGAGGAAGAAGTGAAGAGATTGAAAGAATTGGATGAACAGAACAAGATATCCCtcaaagaaaaggaagacaAGAATAAGAAAGTGTTGATACAAGCGAGAGAAAAGTTACAGCAACTTACTGcTACCAAAGACAGATTGACTTCGGAAAACGAAGAGCTCAAGAAGAAGAACCAATCATATAATGATgagaaggaaggtttgaatcaACAACTTGCCGAACAAGAGATGAGACTCAAGGTGTTGAACTCGCAGTTTGAAGGTAAAGTAACAAGACTGGAGAAAGAATTGCAAGCATCCAAGGAAGATAGAGAGAAGACTGAGAGAGCTGCTGAGGATGCAAAGAAGAAATCAGAGGAGACTAAGCAGAGGCAAGAAATTGACATGGAGAAACTACAACAAAAGCTCCAGCAGTATCAGTCGCTGATCCAGAAACAGCAACTAAAGATCAAAGCTTTAACTGCTGCCGCTGCTGCGGCCTCAAACGCCAGCTCAAGATCCTCCCCAAGCGAGTCGTCCGGAGCTGAAACGTCTTCAACTCAAGAAGTTCCAAGTGTCAGTGTCACATCCACACCGCCAGTTTATCTAGTGCCACCAACAGCGACAATTAAACCCACTACCACCCCGACCCCCATCAAACGAGCAGGTCCCAAGGCCAGTATCAGACCCATTGCAGTGGCACCAACACAGAGCACCCCCACTCCCACAGCAACTGTCTTACCCACCGTTACCTCCACCCCCTCGGAAGCTGTCAGTGTGGCAGGATTTATTAGAGGAACAGGAACTGCTCTCACAACGGCTAGTAGCGTATCGACGTCAGTGCCTACTACGGTTTCTGTTCGTCCTATCACGAGCACCGAAGAAGAGCTTCGACAACCTCCCGAAGGTGAACCAGAGGTTTCGTCAACGGAGGTGACAGTCTTTGAGCCGTCTCAGCCCACTCCATCCACAGCAGTTGTGTCAGGAAAGAGACAGCGAGATGAACCTCAAGTCGCTGACAGAAGCACAACTGAAGTCGCCGAAGGGATCAGCATTGAAGAAGAACCAGTCACCAAACGAATCCGAACAGCGGAGGTTCAGGTCGAAGGAGAGGTAGGCACATCACAAGAGGCTGTTGTAGAGGAATCCACGACTGGAGAGGAAGCAGCCTATTATCAGTTTGAGGAAGGAGAAGCAGTCGAAGAGGTGGCTGATTTTCTTGACGTTGAAGAAGGTGACGAAGATGAAGACGGCgaggaagaagatgaagaagagcaAAGAGAAGGAGCTGTAGATACTGGTGATGAAAGGACTGCGGAAGCCGAAGCAGTTGCACCGGAAGTTGTCTTAATTGAAAGTGATGATGACGAAGTAGAGGAAGAAGACTATAATGAAGATGAAGATGAGGAGTACGCTGAGGAGGCTGAAGACGACGAGTTGGACGAGGAAGGCGAAGGTGAAGGTGAAGGAGAATATATGGAGGACGAGGATGAAGAAGATGAGGGCGAAGACatggaagaggaagaagaagaagaagaagaagaagagagggACGACGGCAAAGAAGACTTGGATGACAAACAGGACATTGTGGAAGTGattgatgatgacgatgttgaTGTTAGTGAAGAGGAAGTCGTCGGTGAAGATGTTGAAGAATCGCAAGGTATGCAAGACGAGCCGCTGGTGGAAGAGACCGAAGGTGATGTAGAGGAAGAGGCTGTTGCAGAGAGAATGGAACAGAGGCAGTCTGAATTAGAGCAGGCACCAACACAAGCAGCTTTGGAAAGGGAAATTCCCACGACAGCTCAGCAAGTCAGTGTCCAAGAAAGCGAAGCTCAGGTGCTGGTGGGTGAAAACAGGAGAACACCTCCTATAACCGCCCAGCAACCACAACGACGACTAAGTATCAGGTCGCATCTGGCGCCCTTCTCGTTCCCACAGGGCCAACCAGCCCCAGGTCCATTCAATGACGAAGAAGACTGCATGGTACCCAGTACCCCTACCTTATTCGTACCAAAAAGAACAGATGGCTTTGCGGAGGCTATCAGCTCTCCTCAAATAAACCCTGCATCATTTTCATTTGGAGCACCGGGTGAGAGTTCAATGTCGCCAGCTGGTGTGTTACAGCTTGGTTTGTCAGAGGAAGGGCTCCGCGTGGACGATACTCAAGTAGACTTGATGGGGGGCTCAGACGAAGCATCAAACGAGAGGCCCTCGTTCGTGGTTCCCACAGGTAGGACACTGCGGAGTCACACCGGCAAAAGAGgctgtaggagctgcgaggaaGCAGTAAAGAATTACAGGAAGACAGAAAGTGCGTCGTTGTTAAAGATTGTAAAACAGAGAGTTGGAGGAAAGAATCAAATCACCCTTTTACTTAGTCCTTCAAGAAGAAAGCGAGGTAGCATAAAAGGGTTGCCAGAAGCATCTGACACTAGTAGTCAGCCCGCAAACCAGCGACTACCCAGCAGCAGTTCGGACACAAGACAGCTTTCTCTAGAAAGCCTTGAGAGCGAACCAGAAGGCGGTAACATAGCTACGGTGCCTGCAATCACGGTGACTGAGGCATCAGAAGAATCCAACGAACAGAATGTCCCCGTGTCACAGGCACATCCCGAAAGCTTAGAGACTGAAGTGGTGGAGCTGTTAGACGACGCAGAGGCCCTAAAAGAAGATGAAGCAGGAGATCACGAGGCCGAAGCTAAAGAAAGACGTGACGAAGCAACTTTCGAATCTCGGGATTCTGCGAGGGAGGACGAATCACGACCGAGCACTTCAGGAGTATCGTCTGATGCTGGTGTCCATTCTTCTGCGGGGTCCACAGCAATGGGAACAAGTACGGCTACAAAACCCAGACAAGATCCAAATCGGACTAAAGGTAGCGTGGTACAGTTAAAAAGGCCTGGCACATCAGCCACTTGGTCTGGTACAAGGGGAGGTCAGCAAGCACAAAGAGGTGCTCCTGCATCTGGCCGAGTGCGAAGACTTAGAAGGGATCCCGTGGCAGGACCCTCTCACCGTGGGCGTGGCAGTCATGTGTCCCGTGGTAGGGGAGGAGGTACCCCCCGAGGTGGACAAACTTGA

Transcript

BRAKERNUST00000054571

Protein

BRAKERNUSP00000054571.1

MAASAVAVEESEVVTALSHSLGISKEILANVASYNEDSASVLGRVKAVFDERVSSEEKYRLDVANLRRARVNAEQQFSQIEKQLISCNSKLESEQKQHARLQKEHEETVANLAEKQKRLQEVESIKEDAAANYSRVSKLNEQLESEKLDLLSVVERKNQEIDRLNDEWKLMSNKLSEANSVKCEAQAKLDEIESQETSLKFREKRIEQEKELVQKQNTWLSDELKTKTDELGKLRKEKSSQVLELQTQLDETIEELSQLKTSAEALRESNTDMKTKVESYMDKLKEAREQFAKMEDHFKTELTSQSKLATLYKDSADEAKKKSDELLTAFEELQKLLKEANEGRLDSDSKLKEQENFQAEKTKEYEDKISKLERELENANDLLAAARQRGAAPLTPAELSTLSPTAAATSSFMKSGMTLTQIYSQYVEVSDALQQEKDENIRLKQYLDQILKEIEEKAPILQQQRRDYEQALHSVDQLSRRLDSALIENEESKGHADEAVRKSEHLKRENDRLRTLSADLSQQVQVLLKECEEARGGVVSSVESMQPMSSAEVTSSSQVISEHLVTFRSIEEMQQQNQKLLGVVRELSEEKEKREGENAIDSLQKQLDDSFKEVEGLKEARERQMKMVEAVVRQRDMYRVLLAASGQTPIPISDEDSPLTSSPLLQRSDKTATELEETKLALKELQRHFETYKTERGQVEGKLSEKQEKLESQNIELNGTNARLSSQLEFIEERYSMLKTNSEAFRKEASAASEKSRNLQVANSKIQATLDSISQELTSMKEKCNKLEVDCENLKAEKALMKESEVRLMQENKSLLEHQKSQNALVTNLQTLQNNLERSEFEARTRLGSQVDTLQRELNLLKKKLESEEKHHKGIISTWENRVQELQSQLNVEIKTHQQARDQLLTSTRDIDSVQLRCTQAEAQLQAAEKRIEDILNSEPGILKEGDQERIRKEVTEQYTVRIEEFELKLNDAEAKIKGLEEQLQHAKKHADQFKSMSEANETALSDLNKTSEEFRRSTETKLNEAEQEISQYKTKVSTLQALNQDLNATRAKLTRETESQTRSLRDMLSKVRAELDEALKKAQTSTAAEVTAKEELKEQAVLAKEAQDKYERELLLHANDVQALTTIKAEFQEQSSKFQEIEDRAVAAEQKLQQHLSSWDEQKKAKASETKKLEARCADLVNQNSTLHSQLEKMSAQLAASKESTVNLAQPPKEVMTTDGASEGNKTVDELWEIIRFVRREKEISETKYELSQSESIRYQQRCEYLEGQLQELQKNVTDQRTQSEVDSQTAAQHAEIMEKVQKLNELTEANKLLTSEKESADDTVRELVTKIQVLEADVRPLKDNIQSLTTQKDALLAEKTALKNEIVRWTAKTNQLSEQFRNVDVDEYKRMKEEKKQFQQQVSSLKTDNQRMRTQTDSLKSELSKTQGELVGLKAVSQKSADQVSSLKEEHQKAISKLQEEVETLKSSVTAKTEEVNEKNKTLLQVKRIARRYKTQVDEQTKEMEDLKKKVNESEQQEGAGKAVGTAAPSAGNVDVAEYENKIKELTEQVNNSEEEVKRLKELDEQNKISLKEKEDKNKKVLIQAREKLQQLTATKDRLTSENEELKKKNQSYNDEKEGLNQQLAEQEMRLKVLNSQFEGKVTRLEKELQASKEDREKTERAAEDAKKKSEETKQRQEIDMEKLQQKLQQYQSLIQKQQLKIKALTAAAAAASNASSRSSPSESSGAETSSTQEVPSVSVTSTPPVYLVPPTATIKPTTTPTPIKRAGPKASIRPIAVAPTQSTPTPTATVLPTVTSTPSEAVSVAGFIRGTGTALTTASSVSTSVPTTVSVRPITSTEEELRQPPEGEPEVSSTEVTVFEPSQPTPSTAVVSGKRQRDEPQVADRSTTEVAEGISIEEEPVTKRIRTAEVQVEGEVGTSQEAVVEESTTGEEAAYYQFEEGEAVEEVADFLDVEEGDEDEDGEEEDEEEQREGAVDTGDERTAEAEAVAPEVVLIESDDDEVEEEDYNEDEDEEYAEEAEDDELDEEGEGEGEGEYMEDEDEEDEGEDMEEEEEEEEEEERDDGKEDLDDKQDIVEVIDDDDVDVSEEEVVGEDVEESQGMQDEPLVEETEGDVEEEAVAERMEQRQSELEQAPTQAALEREIPTTAQQVSVQESEAQVLVGENRRTPPITAQQPQRRLSIRSHLAPFSFPQGQPAPGPFNDEEDCMVPSTPTLFVPKRTDGFAEAISSPQINPASFSFGAPGESSMSPAGVLQLGLSEEGLRVDDTQVDLMGGSDEASNERPSFVVPTGRTLRSHTGKRGCRSCEEAVKNYRKTESASLLKIVKQRVGGKNQITLLLSPSRRKRGSIKGLPEASDTSSQPANQRLPSSSSDTRQLSLESLESEPEGGNIATVPAITVTEASEESNEQNVPVSQAHPESLETEVVELLDDAEALKEDEAGDHEAEAKERRDEATFESRDSAREDESRPSTSGVSSDAGVHSSAGSTAMGTSTATKPRQDPNRTKGSVVQLKRPGTSATWSGTRGGQQAQRGAPASGRVRRLRRDPVAGPSHRGRGSHVSRGRGGGTPRGGQT

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P12270	Nucleoprotein TPR OS=Homo sapiens OX=9606 GN=TPR PE=1 SV=3
F1MA98	Nucleoprotein TPR OS=Rattus norvegicus OX=10116 GN=Tpr PE=1 SV=1
F6ZDS4	Nucleoprotein TPR OS=Mus musculus OX=10090 GN=Tpr PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002126 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07926 all species →	TPR_MLP1_2	TPR/MLP1/MLP2-like protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012929 all species →	Domain	Nucleoprotein TPR/MLP1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18898 all species →	NUCLEOPROTEIN TPR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09291	TPR, MLP1, MLP2; nucleoprotein TPR	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.