Gene detail

Detailed information of BRAKERNUSP00000054757.1 in Montipora cactus

Genomic Location: :...
NR annotation: XP_015751169.1, PREDICTED: MBT domain-containing protein 1-like isoform X1 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERNUST00000054757

ATGCCGCTGCAAGCTGATTTTTTGGAATATATATTTTGGAAGGTTGACGCAGAAGCAGAAAGACAGGGTGAAATGTTAGCTTTTTATGGTGAAGAAGAGACACGTAATTATGGCAGTCCAGACCCAGGCCCAGCATTGGAAAAAGATGATGCCGGCATGAAGCCCGTAGATCCACCAGAAGTGAAGGTCAAGGAGGATTCTCCTAAGGAGGTGGTGCCAAAGGATGAGCCTCTCACAGAAAACATGGCAAAGTGTGAATTCTGCAACTACATTGGCATAAGGGAATCCTTTTTCTCAAAGTCCAAACGCTTCTGTAAAATGGAATGTGCAAAAAGATACTCATCCGCATCCAATATTAAACAGAAGTCAAAAGGAGACAAGATTGGGActtcaaaaaagaaacacaGAACTTCAGACCGACACCATAAAGTTTCTTTAAAACTCGACCTTCTTTCTAACCTAGTGACTGTTTTGTCCGATACAGCAAAGTGTGAATTCTGTTGCTACATTGGAGTAAAGGAAAACTTTTTCTCAAAGTCCAAGCGCTTCTGTAAAATGGAGTGCGCAAAAAGATACTCTGCGTCGAATATTAAAAAGAAGTCGAAAGGAGAAAAGATTGGCACTCCAAAAAAGAAACACAGAACTTCAGAAAGACATCACAATGCAACAGCAGCAGCATCTGCTTTGGCAGGATCAACTTCTGCAATAGCTTCTACAGCAAACACAGCTTCCAGTGGGAATGCTTTAGATCAAGTGGGAGATGAGGATGACATTGACGCACCCAGCGCAAGTGCAGTTCCATTGTCGAGAGAAGATGTTGGCGAGAACTGGCAGAATCGCAGTTTTGATTGGACAGAATACTTGAAGAAAACAGCTGCAAAAGCAGCCCCCACTCATTTATTTCAACACGTCAGCTTGAGCCCTTGTTTGAAGGGTGTTCATGTTGGAATGAAGGTCGAAGTGGTGAATTGCAGCATGGATGTTGTGGATGATACAGATGTAGCTTTCTGGGTGGCGACAGTCATTGAGATCAAGCATTACATAGTTCAGCTCCGCTATGAAGGTTACGAGTCCAGTCCAGCCGGAGACTTCTGGTTTGATTTGAGATCGAAAAACATCCATCCAGTTGGTTGGTGTGCCAAGAGAAACAAACTGCTTATCCCACCTCCAGCGATCAGAGAAAAGTGCGGGAACTGGAGGGACTATCTCTTCAAATGTCTATCTGGAGCCAAGACCTTCTCAGCTGAATTTCTACAACAGCTGCAAAGTCAAGCCTACAACAGATTCCAAAAAGGAATGAAAGTTGAGGTAGCAGATCGCAAGAATATGTATTCAATGTGTGTAGCCACCATCGTGGATGTTATTGGAGATCGCCTCAGGATGCGATACGATGGACTCGATGACGACGTAGCTGAGGACTTCTGGTGTCACTATCAGTCATCAGAGATCCATCCTATTGGCTGGTCATCTTTGGTTGGGCACACTTTACAGCCGCCTATTGgATGGAAGCACAGCCTCAGCAAAtggaatgaatttttagcaGATGATTTGGCAAATTCCCTTGATGCACCTCAAGAATTTTTTGTGCAGgATTCCACCGGTACTGCCCCAGGTGTGCACCAATTTAAAGTGGGCATGAAATTCGAAGCTATTGATCCGTTTAACCCCAGCCATGTATGCGTCGTCACCGTGATCAAAGTGCTGCGGTTTAACTACTTCGTTCTTGGGGTGGATTCATTGGCGACTTACTTTGTTTGCCATGCTAATTCAACCAATATTTTTCCGTGTGGATGGGCGCAGTCGTATAATCTCCAGCTGCATCCACCAAGAGATTATACTACAGTTACATTCAGCTGGCCTGAATATCTCGCCAAGACCGGGGGTATCGAAGCTCCATCATATTTATTTAAACAGGAGAGTAGAAGTGAAAACGGATTTAAGATAGGCAGCAAACTCGAAGCCGTGGATCTGCGTGAACCAGCCCTGATATGTCCAGCGACAGTAACTGATATAAAGGGGCCTCTACTGAGAATTCACTTTGATGGATGGGATGAATCATATGATCAACTGGTTGATATGGACTCCCTGGATATTTTCCCAGTTAGCTTCTGTGCCTCCGTATCACATCCTTTGCAGCCGCCAGGCCCAATGCCAGACAGATACGTGGAGCGGTATGGACCGGTAACAGATGTCAGTCGACAAACTGTACCGAGACCCATGAGCCGACCAGTAAAGAGGAGAACCTCCACAGATGATGACGGCCAGAAAAAGAAAGCCGCTAAACCCCTGTATCCGCAAGAAATCGTCTATATAAACAAGCGCTGTTGCCTGGGCCCCAACCTGAATCGCGACCTGGTGCGCAGTCTTCCCGATGCTGTCCGCGGCTCCGTTGTTGgacctgaaaaacaaaacattatgCGCCTGTGTATGCAACATCTCGTGTCGTCCTCCCTCAGTCCCAAGCAAGTCTTGGAACTATTTAGCCGCGAATTTTACCAGAGCAAAAAGAATAGGGAGTTACAGCTCGGCGGTACGGTTTGTATCGAGACGAAGAGCAAGAATGGCAAGCGGCTAATGCGGCGTGTCAGAGTTGTGAACAAGGCAGAACATTTACAGCCGTATCTTAAGCGAGTCTGTGAAGTCCTAGGGTGTTGCTCAGAGTTCATAAGTTCCATTCGATATCCCTTGGGGCACTGTACACAAACTTGCTGCTTAAAAGGCAAGGATAACGGGGTCACCTCATCAAGCGACGGACGCGCTCTCCATGATTCGGCTTCAGGCGTCCCATCGCCAGCCGGCCTCGTAGGTCTGCCTCTGCATACCAAATATCAACAGCACTCTGCCGGAGCAGTGTCGCACCTAGCCACGGAGAGGGATTCATCGCACGACTCCATGGTTTCCTCCACCAGTAATCTTCCCTCATCATCCGAATCGCAGGGATCAGACGCCGCTTCAGTGCTCTTATATCAGAGCAGTAACAGCGGCAAGGACCCTCGTCTGTGGAACGTACAGGAGGTCACTAACTTCATGTACTCCATCGGATGCTCGAATTACGCCGAAGCTTTCGTCAAAGAGgaAATCGACGGTCGCGCTCTTCTACTACTGACGCAAGAAATGCTGGAGTCGTTAACTGAGAATAAACTCGGACCCATGACTAAAATCCAGAGCGCGGTCAAAGCTCTCAAGCAAGACTGGGGCAtatga

Transcript

BRAKERNUST00000054757

Protein

Uniprot

Uniprot term	Description
Q32N90	MBT domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=mbtd1 PE=2 SV=1
Q6DIN3	MBT domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=mbtd1 PE=2 SV=1
Q6P5G3	MBT domain-containing protein 1 OS=Mus musculus OX=10090 GN=Mbtd1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12140	SLED	SLED domain	Domain	Interproscan
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF21319	zf-FCS_1	Zinc finger, FCS-type	Domain	Interproscan
PF02820	MBT	mbt repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012313	Domain	Zinc finger, FCS-type	Interproscan
IPR004092	Repeat	Mbt repeat	Interproscan
IPR021987	Domain	SLED domain	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR038348	Homologous_superfamily	SLED domain superfamily	Interproscan
IPR050548	Family	Polycomb group and chromatin remodeling factors	Interproscan
IPR038603	Homologous_superfamily	FCS-type zinc finger superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26269	SFMBT; scm-like with four MBT domains protein	-	Chromosome and associated proteins	ko03036	deepkoala