Gene detail

Detailed information of BRAKERRLHP00000007945.1 in Dendrophyllia cribrosa

Genomic Location: :...
NR annotation: CAH3161036.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERRLHT00000007945

atggatgaacaaagaaaaagcaaaaGTGCAAGTACCACAGAAAAACATGCTGATAGAGATGCAAGGAAAACGTCTCGCCAACAGTGCCAGAGCCAAAAGACGAAAATCACTAAGAATAGAATgcaaagaataaataaatcaagcTTGGATGAACAAGAAAAAAGCAAAAGTGCAAGTACCACACCTGCAACTGCAAGACAGTCCCGTTTGGTCGTCAGACCTCTGAAGTCACTAAATGTGAGTCAAGATATCATGACCAAGTACCTAGAAGAATGTCTTGGAGAGAAATTTAAGTTTGACTTGGAAGACACCAAGATAACAGAAGGCAAAAGTAGGCAATTTACTTTTGTTTTTCAGAGTGGGAACCAGGGTAGAAAAGCTGAACGGTTGCTAAAAGAAAACATCAAGGAGAGTGGAAAAGAAATTAATGTCTACATTCTTAAGAAAGATCCAAGAGTCACCACACAAATGTTTCTTTCTAAATCCAAAAAGGAACTTCAAGAAAAGATCAAATCAGTAACAGAAAAGCACACTGTAAAAATCAACGAAATCACTGCTCGTCTTGATAGTCTAATTGTGCGCAAGCACATAAGTTTGGACGAGTATGAAAAAGTCAAATTAGAAAGAGATGCTCTAAAGCAAAAGAAAGATGAACTTGAGCAGCAACAGGAAGAGTTTAAGCGTTCCTCATCCCAGGTAATTGATATTTTATCTGCCCAAAGCGGTCAACCACACTCAAGTGTAGAGAATACTGTCAAGGAACTTAGGAAGTCGTTTGGGCGAGAATGTCGCAGGCTAGATGCAGCCCTTCCTATGTATGCCAAAAAGACCATCATCATTGAGACCATAAAAGAAAACCAAGTTTGCATTGTTCTAGGTGAAACTGGATCCGGCAAAAGCACTCAGATGACCCAATATCTTTATGAAGCAGGTTTTGCCAAGAAAGGCTTAATTGTTTGCACACAGCCAAGAAAGGTTGCAGCCACTAGTTTAGCAGCTCACGTGGCTCGGGAAATGGGTGGAGTACCTGGACAGATTGTAGGCTGTCGTGTTGGTGGAAACATTCAAGCAAGTAAAACCACTGGTATTGTGTACGCAACAGATCACTTACTTCTAAATGAATGTCTCAAGGATCCCAGCCTGTCAAAGTATTCCTGTATTATTATTGACGAGGCCCATGAACGTAGCCTTTACTCAGACCTACTTTTGGGCATGATCAAGAAGAGCCTTGCTCAACGTCCTGAGCTACGAGTGGTCATCACCTCAGCCACCATTGATCCCGCACTGTTTGTGGCTTACTTTGACCAGTGCCCAGTTTTAAAGGTATCTGGTAGAATGTTTCCTGTAGATGTGATATGGAGAAATGGTCCATCAAGCACTGAAAATTACCTTCAAGAGGCCGTCCGCACTGTTCGAGAAATTCACAACAAAGAAGGTCAAGGAGATATTCTGGTGTTTCTTACCACTCCGGCGGAAACAGAGCGTGCATGTGAGAATTTAGCAAAGATGGTGCCTGATACTAGCCTAGTCTGCCTTCCTCTTCATGGGAAGCTACGCCAAGAAGAACAAAAGAGGGTGTTTAATGAAGAAACAAATAAACGCAAGGTAGTATTTGCAACCAACTGTGCCGAGACGTCCATTACTATTCCTGGGATAAGGTATGTGGTGGATACTGGTATGGTCAAAGAGATGAAGTTCGAACCCAAACGAAACAAAAGCTCTTTAGAAGTAACAACCACAAGCAAGAGTTCTGCAGAGCAACGTAAAGGAAGAGCGGGAAGGACTCAGGCAGGAAAGTGCTATCGGCTTTACAGCGAGGAAGAGTATACAACAATGGAAGATGGATCCAAACCAGAGATTCTAAGAGTTCATCTCGGGAAGGCAGTGCTTAAACTAATGGAACTCGGCATTGAAGACATAACCCGTTTCGAGTTTGTGGAGTCACCACCACTTGAATCTATAGAACTAGCATTAGACACGTTGAAATCTCTCGGGGCCATAGCACATGGAAAACTAACAGACTTGGGCCACAAGATTGCACGAGTTTCAGTAGAGCCACGCCTAGCTAAGCTGATATTTGATGGAATTGATCAAGGAATTGGTGCTGAAGCTGTTGCATTGGCAGCGATTGCAACTGTGAGTGGAAGTGTCTTCTTCCGGATGGGTACCGAAGAAGAGAAGCAGATTGCAGACaggaaaaaagttgttttttgtcATAATGGTGGTGACCTGTTGACACTGTTAGAAGTGTATAGACAATACCTTGAGCAGTCCAAAGCGAAACGAAACAAGTGGGCCTTTGACCACAGCTTAAATGCTAAGTCACTTCGCTTGACAGATGAGACCATCAAAGAGCTCAAGCTGGCATTAAAGCATGAACTGAACATCGAAGTACCAGATGCTATTCAACAGAATGACAACACTGATGTCAAGTTACAAAGAATTTTGATTTCCTGTTATGCGACTAACCTCTGTGTGTTTACTGGTCATGAAAAAGCAGGGTACAGAGTGGTATCATTTAACCACTGTACAGTTGCATCCTTCTTCTGCACTAAAATTCCTTGGAGCAACACCGCAATTTATCATCTTTGA

Transcript

BRAKERRLHT00000007945

Protein

Uniprot

Uniprot term	Description
F4KGU4	ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1
P0CE10	ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1
Q09530	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans OX=6239 GN=mog-5 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04408	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR048333	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12818	DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22	EC:5.6.2.6	Spliceosome	ko03041	deepkoala