Gene detail

Detailed information of BRAKERRLHP00000008752.1 in Dendrophyllia cribrosa

Genomic Location: :...
NR annotation: CAH3133736.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERRLHT00000008752

atggcggacgataGCGCTGAAAAGATGAAATCGGGTGACCGTACCGTGGTTTCTCAAAAGGTGCTTTTTGTGCGCAATCTTCCCTTTTCTACGACCGATCAGGATCTAGAAAACGTATTCAGTGAGATCGGACCAGTCAAGCGTTGTTTTGTCATCCGTAATAAAGGTATAAAAGGCCTGTGTCGAGGATTTGGATATGTCACATTTGTGTTAGCTGAAGATGCCGAAAAAGCTAAAAATGATGTTAAGGCATTTGGTGGAAGGCAGCTCAGCATTTCTTTTGCTGACAAGAAACCAAAACATGAAAATAGAAAGCGCAAACAGGCTGGAAATGacaatgatggtgatgatgaggAAAATGCAAATATCAAAGATAAGGAAACCAAAGAACTGCCAACTAAAGAACTAGAAGAAGAACcgtcaaaaaagaaattaaaaggtGACAAACATGAGGAGAAGCAAACATCACAGAAGAAAGAATCAGGAAATGAAATTGGCAGAACTATAGTGATAACAGGACTTGCATCAGATCTCAATTCAAATCACATCAGAAAAAAGTGCCGCAAGATTGGGAAAGTAGTCAGGGTTACATTCCCAGTTGAGGGCAGAGAAAAACCAACTGCGTTTGTTGCCTTTGAGTCCCACAAAGATGCTAGAGAGGCTGTGAAGAAACTGAATGGCAGGATTTTTAAAGGGAACTCCATTGAAGCTTTACTTCTCTCCAGGGAGGGAAAGACCCCTAGTCAGAAATCTTTGAAGAAATCAAAAGTTATTGTGAGAAACTTGTCATTCAAATGTAAAGAGGAGGATCTGCGGAAATTTTTCTCACAGTTTGGACAGGTCACTGAAGTGAACATTCCAACTAAGTTGGTAGGAAAAAGAAAGCTCAGTCTTGGTTTTGGATTTGTCCAGTTCTCCAGCATATTTGAGGCTGCAAAAGCCATCAAAGAATCCAACATGAAGAAGATTGTTGGTAGGCCTGTGGCGGTTGATTGGGCTGTGGCCAAGACTGTTTACGAGCTGAAAAAAGGCCAGGAAGaaggagttgctgaaaaagagaaaagagaaaCTGAAGATAAAGACGAAGAAAAGGACAAAGGAGATGAGAAAGAAAACAGTGAAGATGAAGTTTCAGGCAGCAACAATGAAATGGACTCTGATGTTGATTTGACTGAAGAAAAACTTGGCAACTCTGATGAGGAAGacaaagatgatgatgatgatgatgatgacgatggtgGCGACGATGATGATGGTAACAATGATGACCGAGGGAATGAAGATGACGATGAAGAACATGAACACAAACCCAACCTTCAAACAAGGAAACCTAAAAAATTGTCTGATGTAAAAGAAGGCAAAACCTTGTTTATCCGCAATATTTCATTTGATTCCAGCGAGGAAGCACTTCATGAGTTGTTTGAGCAGTTTGGTGAGATAGAGTACTGCAAATTATTAGAGGACAAACGGACAGGTCACAGTCGAGGAATGGCTTTTGTGAAGTTCAAAACTGTAGACAGTGCTGAGCAGTGTCTAGAAGAAACTGTCAAGGAGGGTTCAGCTCTTTCTTTAGACAACTTTACACTGAAAGTAACCAAAGCTGTAACACCTGGAAAAGCAACGGAACTGGCCAAGGAAAGGAAAGTAGAAGGCAACAAGGAAGGCAATGACAAGCGCAACTTGTATCTGGCAAAAGAAGGTCTCATTCTGCCGGGTTCTACTGCCGCTCAAGGTTTGTCAAAAAGCGATTTGCTCAAAAGACAGAAAGCTGAAACGGAGAAAAAAGCAAAGCTGGAAAATCCCAATTACTTTGTCTCGCCAACCAGGCTGTGCGTGAGAAACCTTCCGCTGAACGTTGACGATAAACGACTCAAAGAAATCTTCAGCAGCGTGACAGGACGGAAAGCGCACGTGGACAAAGTGTTAATTATACGGAGCAAAGATCGCTTGGACAGCTCGGGCCGCGGACGATCCATGGGATATGGTTTCGTGGAATTCGTCAATCACAAGGACGCTTTGTCGGCCTTGCGAGCGACCAATAACAATCCAGATGTATTTGGCGAAGACCGCCGGCCAATTGTTGAGTTTTCTTTAGAGAATAGCCTTGTTGTCAAGGTAAAACAGCGGCGGTTCGATAAGGCTCAACAAAGACAGTGGCATGGTGATGAAGAGCATGCGCGAGATGAGCAGCCAAAGACAAACAAGGAGAGAAGACTGGAGAGGAATCAGAAGCGGAAAGAAAAACGGCAGAGACAGAGAGAGgcgaaaaggaaaagaaaattggaACAGGGAAATGAGGGCGATGGAGAGAAATCCAACGAGAAAAGCAACGAAACGAAGGCTTCGGACAGCGGTAAAAAGGTAGGAAAAAAGGAGAGTGAAAATTCATGGAAAGCAAAAAAAGGGAAGAAAAGCTTCCCAGCGGAGTTTCCAATTCCCCGGATGCTTGAGAAAACTGATcgacaaaacaaaagaaagtttGCATCTATTCCTTCAAACAGGAACAATGATAAGTCTTTAACAACGAACGCCAACTCTCCGGTAGCTGACAAGCTAAGCAAAGTGAAGAAACCTTGGAAAGAACGGGAGGACATCAATAAAAGCAGCCAGCAAACAGCTTATGCTCACTCCAACGCTAAAAACGAAGCGTCAGATAGAAAGAGAAAAGGCACGCGGCGAAAAGAGCAAGAGAGAAAAGACGAATCTAACTTCACGGACATGGTGAACAAATATAAGAATAAGTTGTTTGGAAAGGATGAAAGCGAAACTCCCGCAAAACGTTCACGTTGGTTTGACGATTAA

Transcript

BRAKERRLHT00000008752

Protein

Uniprot

Uniprot term	Description
Q8CGC6	RNA-binding protein 28 OS=Mus musculus OX=10090 GN=Rbm28 PE=1 SV=4
Q9NW13	RNA-binding protein 28 OS=Homo sapiens OX=9606 GN=RBM28 PE=1 SV=3
P37838	Nucleolar protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NOP4 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR051945	Family	RRM MRD1 RNA Processing and Ribosome Biogenesis	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48039	RNA-BINDING MOTIF PROTEIN 14B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14573	NOP4, RBM28; nucleolar protein 4	-	Ribosome biogenesis	ko03009	deepkoala