Genomic Location: JAJLRJ010000003.1:29917745...29932860
NR annotation: CAH3027221.1, unnamed protein product, partial [Porites evermanni]
Species Dendrophyllia cribrosa · all data for this species · gene families
| CDS |
| BRAKERRLHT00000011331 |
| Transcript |
| BRAKERRLHT00000011331 |
| Protein |
| BRAKERRLHP00000011331.1 |
| UniProt accession | Description |
|---|---|
| Q9JM13 | Rab5 GDP/GTP exchange factor OS=Mus musculus OX=10090 GN=Rabgef1 PE=1 SV=1 |
| O18973 | Rab5 GDP/GTP exchange factor OS=Bos taurus OX=9913 GN=RABGEF1 PE=1 SV=1 |
| Q9UJ41 | Rab5 GDP/GTP exchange factor OS=Homo sapiens OX=9606 GN=RABGEF1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004081 (this species only) · gene tree & orthology |
| Ubiquitin family | UBD|ZnF|ZnF_A20 · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01754 all species → | zf-A20 | A20-like zinc finger | Family | Interproscan |
| PF18151 all species → | DUF5601 | Domain of unknown function (DUF5601) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR045046 all species → | Family | Vacuolar protein sorting-associated protein 9-like | Interproscan |
| IPR037191 all species → | Homologous_superfamily | VPS9 domain superfamily | Interproscan |
| IPR002653 all species → | Domain | Zinc finger, A20-type | Interproscan |
| IPR041545 all species → | Domain | RABX5, catalytic core helical domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23101 all species → | RAB GDP/GTP EXCHANGE FACTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005085 all species → | Molecular Function | guanyl-nucleotide exchange factor activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0016192 all species → | Biological Process | vesicle-mediated transport | Interproscan |
| GO:0030139 all species → | Cellular Component | endocytic vesicle | Interproscan |
| GO:0031267 all species → | Molecular Function | small GTPase binding | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
BRAKERRLHP00000011331.1.Genes whose expression across the transcriptome samples of Dendrophyllia cribrosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Dendrophyllia cribrosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |