Detailed information of BRAKERRLHP00000015214.1 in Dendrophyllia cribrosa

Genomic Location: not available for this species
NR annotation: CAH3037708.1, unnamed protein product [Porites lobata]
Species Dendrophyllia cribrosa · all data for this species · gene families

 Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8IZH25'-3' exoribonuclease 1 OS=Homo sapiens OX=9606 GN=XRN1 PE=1 SV=1
P977895'-3' exoribonuclease 1 OS=Mus musculus OX=10090 GN=Xrn1 PE=1 SV=1
P403835'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=exo2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001148 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18129
all species →		SH3_12Xrn1 SH3-like domainDomainInterproscan
PF17846
all species →		XRN_MXrn1 helical domainDomainInterproscan
PF18334
all species →		XRN1_D2_D3Exoribonuclease Xrn1 D2/D3 domainDomainInterproscan
PF18332
all species →		XRN1_D1Exoribonuclease Xrn1 D1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR041385
all species →		Domain5'-3' exoribonuclease 1, SH3-like domainInterproscan
IPR047007
all species →		Homologous_superfamily5'-3' exoribonuclease 1, D1 domain superfamilyInterproscan
IPR047008
all species →		Homologous_superfamily5'-3' exoribonuclease 1, SH3-like domain superfamilyInterproscan
IPR041412
all species →		DomainXrn1, helical domainInterproscan
IPR027073
all species →		Family5'-3' exoribonucleaseInterproscan
IPR041106
all species →		DomainExoribonuclease Xrn1, D2/D3 domainInterproscan
IPR040992
all species →		Domain5'-3' exoribonuclease 1, D1 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12341
all species →		5'->3' EXORIBONUCLEASEInterproscan

 Gene Ontology
No Gene Ontology signature was detected for BRAKERRLHP00000015214.1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERRLHP00000015214.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP