Gene detail

Detailed information of BRAKERRLHP00000023602.1 in Dendrophyllia cribrosa

Genomic Location: :...
NR annotation: CAH3040632.1, unnamed protein product, partial [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERRLHT00000023602

ATGAGGGAAATGTTATCGTATCCAGAAAACAGAGGGAAAGATTCCGTGAGTTTGTTATCGAAAGTGGCGGCTCGAGTTGGGGAATCGGTAACCTTTAGAATTACTTACGTTGGCAAAGCGGCACTTTTAGATGTGAAGCTGTTTGTTTGTGAGGTGAAAGTTGGACGTCTGATAAAATGTAGAGGAACTGGATCGCATAACAAAAAATCCGCTGAAAAGAATGCTGCAGAAAAGCTGCTGGAAAGGATTAAAAACAGAGCTGATGCAAGTGGGAATTCGCCAGAAGCCTTGCAGGTGTCACCAAGCCATTCTGCCAGTCCAGCATTCAATCCTATCGGCAATCTGCAGGAAATGTGCATGAAGAACAAATGGACACTTCCAAGTTATGAACTAGTTGAGGAAACTGGGGAGGTACACACAAAGACTTTCATTTATGAATGCAAGatTAACTCATGGGGGGTTGTTAAGGGTAAAGGAAGAAACAAAAAATCAGCCAAGAAACTCGCTGCAGGAAATATGCTGACCTTGATCAGAGAGACAACAGCTGCACACTATCAAGAAGATGCAGATGAGCTTTCAACAAGACTGAAAAAACCTTTAGAAAAGGCAGGAGGAAAATTGGATTTTTCTGTAGACCAAGAATTCTCTGAAAAAGCGGTTCCTTTGGAGATTAACTTACGTGGGCCTTTGGCTTTGGAAGCCTACAACAAAGCACTCTCTGAAGGAAAGGCTTGTGTCAAGAGGGTGCCAGTCATGCTGATTGGACAGGACCACTCTGGAAAGACCAGTCTCAAAAAGTCGCTTATGGGAAAACCCTTTAATCCAGATGAAGACAGTACTGTGGGAATAGATGTTGATCCATCACATTTCAAAGTCTCAAGTGAGATATGGAAGGCAGGAGAGAGCACAAAGAACGACCAAGCAACAAATGATGTAGACGCCACTTCCTTTGAGCACCATGCGGCTCGTTTGGTCGCTGAAGATTTGAAGGAAGAAAAGAGTGGTACAAAGTCTATGCGATCTGAAAACATCGAATTTAAGAAGGAGTCATCTTTAGATGTGCCTAGTTCGAGTAGCAATAACGCAGCTGAATTACCCGTGGATATCAGAAAAACTGCACCATCTAGTGAGACAGCAAGAAATGCCACAGAATCTATTCACAcattaaaagatccaaaagtTGATGTCAGGAAACGCCTTCCAGAAACCGTCCCTGACCCAATTCAGAGGAGGGAAGAACACTCGCCACTCGCCGCCAAGATACCAGACGAGGTAGcaattttgattaaaaaattACTACGGGAAGTTGAGAAAGTGCAAGATGAAGAAGaaatatattcagttttgtgGGATTTTGGTGGGCAATCTGTTTACTATGCAACTCATCCACTTTTCATCACAGCAAGAGCAATGTACCTTTTGGTTTATGACCTCAGCCGGGATCCACACGAAAAAGCTGAACCCATCGTGAAGCAAGGAATGTACAAGAAAATTTTAGACAACCACGGCGCGAAAACTAACCTGAGCTATCTTAATTTTTGGATGACATCCGTTGCTTCTCTAGCTAGTCAAGATCAAGACCAGCATGTTCGTTTAGATCGAGTGCGAGTAAATATTCCTCCTGTGCTCCTAGTTTGCACACATGCCGATAAACCTTTTGGTGGGGCAAATCCATCTGTTCTCGCTCGTGAGGTATTGGGTTCTCTACAGACCAAACCGTACAGAAACCAATTGTATAAAGATGTGTTTGTCGTGAATAACAGAAAGTCCGGCACCGAATTTGAATGTTCAGAGGCTATACGTTTGCGGGAAAAAGTACTTGCTGTTGCTAAAGAGCTACCACAGATGAAAGAGGCCATCCCGatcaagtggttaaaatttgagAAGGCTCTTGAAGTCACAGTAAAAGAAGGACAAAAGTGGATTTCCCTTGAAATTGCAAAACAGATTGCATCTGAAGTGTGCAGAATTAAGAACGATCAAGAGTTTTTGACATTGCTGGACTTTCTACATGATCAGAGAATCTTGATTCATTTTGATGATACTCCAACGCTGAACAATATGGTTGTTTTGGACCCTCAGTGGTTGGTGGATGTGTTTAAAAAGGTGATAACCATTACGCCTTATGACCACGAAGAAATAGAGTTTGAAGAATTGTGGCGTAACCTTGAGTCAACAGGCATCCTGGATGAAAACCTGTTAGAACATAGTGACAAAGTTTACGTCAAACTTTCTGCACCTTGGATTGAAACTTCAGATGCACAGCTTACGATCGATACCATTGATGGAAGCCTTTTAGTTCCTGATGAAGGTCCTCGGTTGCGTGAATCCCTTGATATTCGACGGATTCCTTTTCGCCAGATGAGAGCTCTGACAGTCAGGTTGAGCGGCGGGGATGAGTGGAAGATAGTTGCTGAGGAACTGGGCCTGAATTCAGATGAGATTCGTTACCTTGACAACCGAACTCAGAATCCATGCGAGGCTTTGTTGGCGTATATTGCTCAGCACTGCTACAGAAGTGTGGGGTACCTGTACAACATACTGAGCAAATGTAAACTTCCCTTGGTAGCTGATATTCTGTGA

Transcript

BRAKERRLHT00000023602

Protein

Uniprot

Uniprot term	Description
Q6XHB2	Probable serine/threonine-protein kinase roco4 OS=Dictyostelium discoideum OX=44689 GN=roco4 PE=1 SV=1
Q5S006	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus OX=10090 GN=Lrrk2 PE=1 SV=2
Q5S007	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens OX=9606 GN=LRRK2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF00035	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF00531	Death	Death domain	Domain	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014720	Domain	Double-stranded RNA-binding domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000488	Domain	Death domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR051247	Family	RISC Loading Complex Component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46205	LOQUACIOUS, ISOFORM B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016442	Cellular Component	RISC complex	Interproscan
GO:0030422	Biological Process	siRNA processing	Interproscan
GO:0035197	Molecular Function	siRNA binding	Interproscan
GO:0070578	Cellular Component	RISC-loading complex	Interproscan
GO:0070920	Biological Process	regulation of regulatory ncRNA processing	Interproscan