Gene detail

Detailed information of BRAKERRLHP00000028434.1 in Dendrophyllia cribrosa

Genomic Location: not available for this species
NR annotation: CAH3017397.1, unnamed protein product [Porites evermanni]
Species Dendrophyllia cribrosa · all data for this species · gene families

Sequence

CDS

BRAKERRLHT00000028434

ATGGATTTTTCAGAAATCCACGAAGATGAACTAGGAAGTCTTGGAGTTGACTTTGAGCATGGAATGCGCGGTCCCAGACCACCCTTCAGACATCACGGACCACACCCATTTCCTCCTTTTGGACCTGGAGGACCTCATGGGCCTCGCATGCCACCAGGAGGTCCCATGCCGAGACCCCCAGGTCCTATGATGATGGGACCCCCTGGGCTACACCCCCGCGGGCCTCGTGGGCCCATGATGCGAGGTCCCATGCCTGGCCCTCATGGTCCCCCAGGTCCTATGGGTATGCCGCCAGGACACATGCGACTGAGGATGCCCCCAGGGGAGCCTGATGGGCCCCACATATGGGGGGACAGGGGCAGGGGGAGGAGGCCTGGAAAACAGCAGATGCATCGGCAAATGAGCAAGGAGGGTCCTAAGGCAAAGAAAAGCCCAGTCGTCGAAAAAGCAAAGAAAGAAGATTCTAAGGCTGTTGTTGGGGAAGCCACAGGACCAGTGGCCAAAAAGCCAAGGAAGTCAGAAGATGACTTGGAGGATCTCGATGAGGAAAAGTTGTTGAAGAGTGATGATGAAGGAGAAGGGGCAAACAATGTTGACTTAGATGCTGTAAGCATACATGGGGATGATGAGCTAGATGACATTGATAAAGAGATCAAAGGGCTTTCTGAAGGGACAGCTGAGAACAGCAAGAAAACACCCCAGAAAGGTGTAGAGGAAACTAAAAAGGCAACGCCTCAAATTGCCACAAGCAAAGAAAAGATAAAGAATGACAGTGACAGTGAAGATGAAGAGAAGAAGAACAGACAACGCTTCAAGTCTGAGCGGCCCAAGGAGCAACACAAAATTGAGAAACATGAACCAAAAAGGGACTTCAGAAAGCAAGATGACAGAAACTGGAACAGAAGAGATCAAGGAAGGGGCCGTGGACGAGGAGGACCAATGATGGGCCCACCACCACAACCAGGAATGATGAGGCCAGGCATGCATCCGCCATTCCCTCCAAGAGGACCAGAACCCTTCATGCATGGTCCTAGACCTGGAATGGGGCCAGGGCCAGATCATGGGCCTGGATTTGGTCCCAGACCTCGTTTTCCTATGGGTCCTAATGGACCGCTTCCTGGGCATATGCCTGGGCCCCCTGATGGCCATATGCCTGGACCACCAAGGCCACCTCAGGGAAAGAATATTCACATCAACCCACACTTCAGACCTCCACCTGGTGGTAGAGGAATGCCAGAAGGTCCAGCTCCCATGCGAGGACCACACCCAGGCCCCCCAAGACCCGATATGCCAGGGCCCCGTATGCCCATGCACCAGCCAGGCCCAGTGCGCCCAGAAGGTGCTTTCCCACCAGGCCCTGGAGGAGGAGACTTTGGTCACAGGGGACCACCTCCTGGAGGTCCCAGAGGGCCCCCATCAGATCAGGGGCCCAGACCTGGAATGGGTCCTGAACCAGGCCCACGTCCAATGGGCCCTGGAGGTCCTGGCCCCCTGCCAGGACCTGGACATGGCCCTGGTCCAAGACCTGGCCATGGGCCCTTTCCTGAGGGTGAAATCAGACCACCCCATGGAATGGGGCCTGCTGCACAACTGCCACCTAGGGGAGCTCCTCCAGGGGTACCAAACATGATGCCACCCCATGGCCCCATACCAGGACGCGGCCCAGCACCAGGAGGACCTGGACCTCATGGCAGTGCACCAGGAGGACCCGGTCCCTTACCAGGTCAGCAGCACCCAGGCATGCCACAAAGAGGACCGTCACCTGGTATGCCATCTTCAGGAGTACCTCCTGCAGGGCCCATGCACCTAGGAGCCATGCAGCCAGGGATGCGACCCCCAGGAATGAATCCTGATGTACCCATGTCTGAACCTGAGAGGATTGTTATCGGTCATCGCGTTACAGTACCTAACATGGAAGCAGCCAATGTGGCAATGCGAGGTGGTGGTCCTCCACCAGGATTTAATGCCGTAGGAGCAGCAGCTGCTGCTGCAGCTGCAGCACAAGGAGCTAATTTAGCAGCAGTCGCTGCAGCTGCTGCCAGACAGCAACAGTTCCCATATGGACAGCAGTACCCCTATGATTACGCTGCTATGTATGGTGCAGAGTGGCAGTTGATGCAGCAGCAAAGGGATGCTGCGTATGCTGCTGCTGCTGCGTATGGTCTGGATAAACACCCAAAGAGCCACAAATCAAAGAAGCATCGTAGGCGTTACAGTGCAGACAGCGCAGAGAGTGATTTCAGCAGTGCCTCAAGATCACCATCAAGATCAGCATCGCGTTCATACTCCAGATCACCTGCAAGGTCTTGGTCCCGCTCACGCTCATTATCACTGTCAAGATCCCGATCCAGGTCATCATCCAGGTCCAGATCATTCTCAAGGTCAGTCTCGCCACGAGCTCCACAACAAAGATCACCTCCGCGTGTTGCAAAACCAGTCCCACGTCCAAGACGAAATATTGACAGTCGCAGGGAACGAGAAAGGGAAAGAGAAAGGCCAGACAGAAGTCGTGAGAGAGAAAGGGACAGACCAAGGGAACGACCAGACAGAAACAATGAAGCAGTTAGGAACCGTGAAAGGAATGACCGAGAAAAACCAAGGGAGAGAGAGCGAGAGCCACGTGAACAAAGGGAATCTCGGGAAGCACGCCATGACAGACCACGGGAGAGAGATCGGGAGAGAGACAGAGGGGATCGTGACAAAGcaaaagagagagagagggatAGAACAAGGGATAGAGAGAAGCCTAAAGATGGTCATCGGAGAAGTCGAAGCAGAGATCGGTCATCTCACCGACGAGAAAGTAGGGAGTCGAGACATTCCGAGAATAATTCATCTAAGCGTATCGTAGTTGGTCCTTCAGAGAGTAAGGGCAAAGCATCTGGCTCTACTCCTGACTCAAAAGCAAATCGCGTTGTTGTGACCAAAGCATCCAGCAGTGGCAAACCTTCAAACCGTGTCGTGATTGGTTCGTTACCTGAAGCGATAACACCAAGCAGGCTAAAGGAGCTTTTGCAGGGCATTGGACCAATACAGCAACTCAAAATGTCCACCACAAAACATAAAGCTTtggttacatttgaaaagaatGAGCATGCATTGGCTTGTCGCCGCAAATTTCACAGgaCTGTAGTTGACGACAGCCAAGTTACAGTTGACTTTCTTTga

Transcript

BRAKERRLHT00000028434

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005437 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15439 all species →	RETINOBLASTOMA-BINDING PROTEIN 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERRLHP00000028434.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.