Gene detail

Detailed information of BRAKERRLHP00000029304.1 in Dendrophyllia cribrosa

Genomic Location: not available for this species
NR annotation: CAH3140258.1, unnamed protein product [Porites lobata]
Species Dendrophyllia cribrosa · all data for this species · gene families

Sequence

CDS

BRAKERRLHT00000029304

atggcgggtaaaAAGGGCATTCGAGATCTCTCTGATTGCGAGTTACTGAGCGAACTCAAGTCTTTAGGTTTAAATGTTGGACCGATTAGCTCAACTACCAGACGAATATATGAAAAAAAGCTCTCTAAAGCCCGTGGCTGCGATGTCGTTGACAGTACTGACAGTACTCTCGAAAGTCAAGATGCACGTGCAAATGTTGGTGAGAGCGTAAGTACAAATTTTAACAATTCCATTGGTGATAGTACAAATCGTACTTCATCAGAGGCTTTGGAAAGCCCTGCGGTATTTTATGGTGTCTGTTTTGATGTGGTTCGTTCGTCGTCTGAGAGTGGATTACCAAGTGTCCCCGCCGTGTTTACAAGCAAAGACGAAGCActaaaaacagcgaagaaattCAAAGGTGCTCGCTTCAAAGGGTTCAAGAACAGAGGTGAAGCTGAAAGTTTTTCCCGATCACTATCAAAGGAACAGGAAAACTCTCCTGCTGTAACGAGTTCTTTGTCCGCTCCTGTAGATCCTGTAAGCAAATTTAAAGGCCCGACCCCGCAGGAGTTGGTCAAATTTCGTAAAATTATAGAAAACGGTTCAAGAGATGAAGTTCTTGAGATGGTATTGAAAAATCCCAGATACTTGATAGGTCCCGGTGATACTCCAGTGATCTTACAAGAAGGATTCAGGTATAATGCTCTTCACGTGGCTGTGAAAAATAACAGAGAGGAGATGTGTCAGTTGATTATCAATACTCTGGAAAGTGAACACTTTTGGAACACTCTTTTAAACCAAGAGACTCAGTCAGTGATGAACAGCCAAAGGAAGCAGTTTCTAGTTGATATGTACTTGAATACTCCAGACAAGGGGAACTGGGAAACTCCCTTGCATTTTGCATGTAAATTTGGTTATGCTGATGTAGTGGAATATCTCGTGTCTCATCCTCTAACTGACATTCAGAGAGCAAACAAGTATGGAGAAACTCCAGCACAGGTGATCTGCTCCAGATGCACTGCTCCAAGTTTTGTGTTGAAAAGTCAAATAAGGAGCTTCATTGAGGACAGCTGTTTTGTTCCACTCATGGGATCAGTGGACAATGCCACCCCTCCCTGGATAGAAGGTCCTTGGTCACCAGAAGTCACTGATGAAAAAAATACCCGGGAACCTGGAACACACGAAAGGCCACTTAGTAACAGCTTGAAACAAAGGAATAGTCCTGGTGAAATGCCTATTACTGTCAGGGCATATGCAGGGCCAATGTCTCCCTCAAAGGCTGAAGAATTCTACCTTTCATGGAAGACTCCACCCAAGCTAGAACAGCGTAACAGCTACATTCAGATAAAGAGAAAAGATGACAGTCGTGGTGTAGAGAGGATTGGAAGGGAGCTTGCTCATAATGGAAAGATCCCTTGGATGGAGTACTGGAATTTTCTTAGCTGCTATGCAGACTTGTCAAGCACCCAAGGTCTTGAAAAACTAGAAGACTATCTGACCAAGAAAAAAGACAGCATTTTGTCAAGCAGACTATCAGTGACGCCCCAAAGAGTAAGACATGTTAAGAGCACTAGCAGTGCTGTCCTTAAAACCCCTGAATCGAGGCAGAGCAGTGTTATTTTAAGTGATGATGGTTTGCTGAGTGAAACAAGAAATATAAGTGGTAACAACCATCGTGATAAAGCTGTTGCCATGGATTTCATTGAGGGTCATCACTCAACATCCAGGAAAATTTGCTTTTTGGATTTGAAGATGGAAACAGATAGTGCAGATGTGGAAGTGAAGAAAGACATACCATGGGTTTCAAAACAACAGAATGTCATGAAATTTAATCTCTCAAGTCAATCTTCAGACATCAAGTCAAATGAACCTGTAGTGAAGGCATTGGTAGAATCTCTAGATGCACTCTCAATGCATAATGAAAAGGCTGTAATGCATGATACATTGTTACCTGAAGATCCAGGCAAAGAAAATGAACTAAATGAGAGTAGTTACGCTGTGGAAAGAAGCAAAGTAAAAGATGATGTGGATAATGCTGGGGTTCTGCCATGCAAGAAAAAGTTGTCGTACCACTCACCAGAAAATAAAAGCGAGCTGTTAGACATTAAAGACGAAGATCTGCCTGATGTTATTTCCATGGCAGCAGGTAGAGAAGTCAAGGTCAAGTTAGGGGAGAATAAAAATAATGTTGAGGAGAATTGTAAAAGATCTGCCATCTTGGAAAATGTCAGAAATGAAAACCTGTTATTGTCTTTAAAATCTTATGATGATGAAGTGTTTGAGAACAACACAGGAAATGATGTTGTTAGATCTGTAGAGGAAGATTGCACCAGTTTTGGTCATGTTGGACATCAGGACTTCAAAGTTCCTGAAATCAGAAATGTTAGGCATGGCAAGGGTGCAGACAGCAGTAGCCATGTTCCAGTCTCAGGAAATGCTATCAGTATTTTCATCCAGGGATTGCAGCCTAGTAAACTAGACCTTGATGTACTTATAGCCATTGGTCAGCTGGCCAAGTCCTGGATCGCCAAGGTTCCACACAAGACACAAGTCTCTCATGTGGAGCTGCTAAACTAA

Transcript

BRAKERRLHT00000029304

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P1H6	Ankyrin repeat and LEM domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ankle2 PE=1 SV=2
Q86XL3	Ankyrin repeat and LEM domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ANKLE2 PE=1 SV=4
Q7TP65	Ankyrin repeat and LEM domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Ankle2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004842 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01693 all species →	Cauli_VI	Caulimovirus viroplasmin	Family	Interproscan
PF03020 all species →	LEM	LEM domain	Domain	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR011320 all species →	Domain	Ribonuclease H1, N-terminal	Interproscan
IPR003887 all species →	Domain	LEM domain	Interproscan
IPR011015 all species →	Homologous_superfamily	LEM/LEM-like domain superfamily	Interproscan
IPR037056 all species →	Homologous_superfamily	Ribonuclease H1, N-terminal domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR051108 all species →	Family	DHHC palmitoyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12349 all species →	ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0035307 all species →	Biological Process	obsolete positive regulation of protein dephosphorylation	Interproscan
GO:0042326 all species →	Biological Process	negative regulation of phosphorylation	Interproscan
GO:0051721 all species →	Molecular Function	protein phosphatase 2A binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21412	ANKLE2, LEM4; ankyrin repeat and LEM domain-containing protein 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.