Gene detail

Detailed information of BRAKERRLHP00000031123.1 in Dendrophyllia cribrosa

Genomic Location: :...
NR annotation: CAH3111258.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERRLHT00000031123

ATGTGTTTCATTGCTGCATCCATGGGCCTTGCCTTTACCAGTCTCCTGTACATCAAATGTGATGCAAAAGACATAGCAGGTGTCAACAAGCCCTACCCTAACAGCTCAGCTGCAATCCAGGTCAATTCGAATTGTAACCAGGCCTGCAATTGCAACGGAGTGAGGTTTGAACCTGTTTGCGAAGGAACGCTGACCTACTTGTCACCCTGCCATGCTGGCTGTAGTCAAATCAACATTAATAATAAGACTTCTTCGTTCTATAAAAACTGCGCATGCGTCGAGTCCAAACATGATCCCATCGGAAAAGTGGAAAAGGGTGCTTGTGAAACGGACTGCGAGATCGAATTGATTTTGTTTATGCTCGTATTGTCTGCCATCACTCTTATGACGTTCATGAATGCTACTCCTGCATTAGTAGTTACACTAAGGAGCATTCCAGTTGGTCAGCAGTCTTACGCCGTAGGTTTGCAGTCGGTTCTTATAAAGACTATCGGAACTATTCCCGGtcctattattttaggagtatTAATAGACAAAACCTGCATCCTTTGGAACACAATTGCCAGGAGTATGAAAGTGTTACTGCATAACAAAGAGCTATGGGAGAAGTTTAAAGAACACCAGACAGAGATGAATGTTACTAAGGAAGGAAGGCGAATGTGTCCTATGATTTCATTGACATTTGAAGACCTCAACCCGACACAGATGTACGCAGTAATGGTAGACTTCGTGTTTGCGGATGAATTCAGATACTGCTTTGATGCAACTTCCAATCGTTGGGTTCCCTGGGGTCTGATAAAGGAGGAAAATTGCTCGAGAATGTACCTTCACCCGGAAACTCCAACGACTGGCGCTATTCTTATGAAAAGCATACTCACTTTCAAAAAGCTGAAATTAAGCAATAGTTCAAAGACCGCGTGGAATTGCAAGCAAGTGATGCTTATGAACACGATGCGTCGTTATTTTCCTCGAATTCACCTCCTTGAAAGTCCTGATGGTACTTCGTTTGATCACAGACTAAGGACTGAGTTTTGTTTCGCTGAAACGGATTTCATAGCTGTGTCTGCATACAGAAATAAGCAGatCACCAAACTTAAAATAGACGCCAATCCTTTTGCTTCAGCTTACAGAAGCAGTGGTCTCCATGGACAAGCTAAACGACGTCGCATGGAATCTAATAACGCTTTGAAGAAATGGAAAGCCACCTTAGAAGATGATTCGCCTTCCAATAGCTCAAGCCTCGAAGAGAGTTCAAACAACGATGACGAAACTGACTTTGAAAATGCCAAATCTTCTGGGAATGAACTTATACACGCACCCACTCCTGTTCAAAACTATGACGAACAAGAGTTGAATGGAATACGTGCAGCGATACCCTTCTTGAAAGaACGACTACGTAGAGATGTGTCCTACTTTGTATACAACCCGATTTACAATGGGGCACTCAGCCAAGGAAGGGTGGCAAATTCACCACAGGTGACGGAAGATCATCCTACGGCGCAAACGTCTAATATAAGTGTAACTTCGTCGCAGTTAACTTGTGAAGAATCCACAGAATGGATGTGGAGGTTTGATGAGCAGGTGTCAATGAGATACTCTCCTGAGCGTCCTGAATTGGAAGCTTTCCTTCCTAAGATGGCGGACAACCTTGAAATTGCTATTAAAAATGGAGACGAAGCGAGTAATGAACAAGAGCGAGTCGACCACCGCGATGATGCAACGAAGAATGGAGATGGGTTACGTGATGCTGCCAAAGGTACAGTCAATAGAAGAAAGAAATACCTCCCGAGGAAACTGCACAGAACAGGGGACATACCTCTAGTAGATGCGAGCTCTATAGCAAACGAAGTAAGGATTCAAATACAAGCGGATGTTCCGACTACCAATGAAACAAACTTATCAGTATCATCGCAATCACAGAGCACCGAATGTAATAGAGATGACAAAAAAGAACGATTGCGTTCAGAAGTTACCACACCTCTGGATTCCTCGGTGGTTATATCGCCTTGTGTAGAAGCAGTTAAGTCGCTAAGTTCTCAGGGAATGTTTACTTTTCAAGATCAAGACTCCCCTGGATCGAGGTTGCGAACTACTGCAGGATTATCAGTCACATGTCAGGACGGTTCAAGTCTATCGCCTAAGGAATCTGACGAGACAACACAAGCTCGTAACACTTTGGTGTCCATTTCTTCATTTCCAGAGAACAGTACGGACTCTTCTTCCCTTACTGCGTTGATTCACATGTGCTCCGAGGCAGGTGGATCTTTGAGCGACAAATCTTACCATCCGCGGTCCAAACAAGACCAAAGTGACCTAACAACCGGTATATCTTCCATTTGTCAGGTTTCGTTTTCACAAGAATCCACAACAACATCACCGCCGTCTTCTTGCGGCTCTGACTCTGTCCCATCAGATGTTCAATCaataaaatattcaaataatTCAGACGAAGACAACATAGCAACACTTGCATCGAAAGGTGAAGAGAAAACAAGCTCTCCCTGCACTTCAACGTTTTCTTCGTCTAGTGATCACGTGGCATCATCCGCCATGCTCAGTACTTCGTCGCCAATGACTACGGTGACATCTGCTGTAGTCAGTGACAGTTGCGAGATTTCTCTCAGAAGCGAGAACTTCGACAACGACGACAAGGTTTCAACAACGACAACTCAATTCCAAGCTGCGGTTGCAATTGAAAAACCGTGTATTGGTAACCCAAGCCACGTGAACTCAATTCCTGGTCATGTTTTCTTAAACGAGTTCAGCGGAGGGCAAACTTCTGGGGAGAAACAACCCGGATATAGGCCTATCGTGCCCGCTCCGAATCAATCAATGGACGTTAATACTGTTGAGTCCACAACAAATGTTTTTCAAGACAGCGGATACTACCATGACAACGCTCTTTATCCCATAATAGTAGACAGTTTTTCACTAACCGAAAATATAACATATCCTTTTGCGCAACCGCCTCAAGTTAACCAATCATACTTTGCGACACCCAACTCGAATCAAACAGGAATGACAGGTCATACCAGTTTCATCGCCCTTGACAACACTGTTGTCAAACAGGCTCCTTATCTGGAGAAGTTCTATTCTTTTGCTGCACCAAACAAACAGGAACATCAAGTTCGTCGCTCGCAACTTCGTGGCAAACGCCACTATAGGACGACTCGCACCAACTTTAGCCGCTTGAGCTTGGAACCATTGTGCAGTGTGATTTATCCGCTGACCAGTTGTACACGTCAGTTAACAAGTCAGGGAAATCCATCGAAGGAATCAGTTACTGAAGATGTGACCCGTAGCCAAGGAGTATGGGATTGGAGGATTGGCTAA

Transcript

BRAKERRLHT00000031123

Protein

Uniprot

Uniprot term	Description
Q9W7C2	T-box transcription factor TBX5 OS=Xenopus laevis OX=8355 GN=tbx5 PE=2 SV=1
Q24432	Optomotor-blind protein OS=Drosophila melanogaster OX=7227 GN=bi PE=1 SV=3
Q9UL17	T-box transcription factor TBX21 OS=Homo sapiens OX=9606 GN=TBX21 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03137	OATP	Organic Anion Transporter Polypeptide (OATP) family	Family	Interproscan
PF00907	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001699	Family	T-box transcription factor	Interproscan
IPR004156	Family	Organic anion transporter polypeptide	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR002350	Domain	Kazal domain	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR018186	Conserved_site	Transcription factor, T-box, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan