Detailed information of BRAKERRLHP00000031270.1 in Dendrophyllia cribrosa

Genomic Location: JAJLRJ010000008.1:39981449...39994196
NR annotation: XP_027042174.1, cytosolic arginine sensor for mTORC1 subunit 1-like isoform X2 [Pocillopora damicornis]
Species Dendrophyllia cribrosa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q0V8A3Cytosolic arginine sensor for mTORC1 subunit 1 OS=Bos taurus OX=9913 GN=CASTOR1 PE=2 SV=1
Q8WTX7Cytosolic arginine sensor for mTORC1 subunit 1 OS=Homo sapiens OX=9606 GN=CASTOR1 PE=1 SV=1
Q9CWQ8Cytosolic arginine sensor for mTORC1 subunit 1 OS=Mus musculus OX=10090 GN=Castor1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004252 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13840
all species →		ACT_7ACT domain DomainInterproscan
PF21389
all species →		CASTOR1_ACT-likeCytosolic arginine sensor for mTORC1 subunit 1/2, ACT-likeDomainInterproscan
PF18700
all species →		Castor1_NCytosolic arginine sensor for mTORC1 subunit 1 N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026249
all species →		FamilyCASTOR familyInterproscan
IPR045865
all species →		Homologous_superfamilyACT-like domainInterproscan
IPR027795
all species →		DomainCASTOR, ACT domainInterproscan
IPR049479
all species →		DomainCytosolic arginine sensor for mTORC1 subunit 1/2, ACT-likeInterproscan
IPR040778
all species →		DomainCASTOR1, N-terminalInterproscan
IPR051719
all species →		FamilyCytosolic arginine sensor for mTORC1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31131
all species →		CHROMOSOME 1, WHOLE GENOME SHOTGUN SEQUENCEInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for BRAKERRLHP00000031270.1 in Dendrophyllia cribrosa.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23081CASTOR2; cytosolic arginine sensor for mTORC1 subunit 2-mTOR signaling pathwayko04150deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Dendrophyllia cribrosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Dendrophyllia cribrosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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