Gene detail

Detailed information of BRAKERRLHP00000032130.1 in Dendrophyllia cribrosa

Genomic Location: not available for this species
NR annotation: CAH3016769.1, unnamed protein product [Porites evermanni]
Species abbreviation DCRIB · all data for this species · gene families

Sequence

CDS

BRAKERRLHT00000032130

ATGCTTAATGGTGGTTGGGGACAGGGATCAAACCCTTCCAGCAGAAGGCAGTCTCTTCGACCGCCCAGCCCGGGATCTGAGGGGCCGTCTGCATCATCGCAATCTCGGAGAGGCTCTAAAGTGTTGTTTGATACCAAGACGCCACCGTCTATTCTGAGATGGGAGATTTTAAACCGCGTCTTAGCTCTGTCCGTGAAGGGAGACTGGCCAGCAGTTGATCAGCATCTTATTAGCCTCGGACGAAACAACATGGAAATATCATCGACGGAGATCGAAGACAACGGTCTGACGCCGTTGATGTTAGCGGCCCGTGACAACAAACACAACATTGTTGAAAAGCTTCTTGAACTAGGAGCCGTGGGAGGCCGCTCTGCTCTACATTATGCCGCGTTTTCAGGCTCAGACGGGATCGTTAAACTTCTTCTGTCCAAAAAGGCGGATGCCACTCTTACAGCAGGGCCGGAAGAGCAACTGCCCCTGCACATGGCCTGTAGCCGCCCCTCTGGCGCACTGGAGATTGTGAAAACGCTACTGAAGTCGTCTGGGAAGGATGCCAAGCTTGCGACCGATAAGAATGGCTCGATTCCACTGTTCCTTGCGGTCATGGCTGGAAATCAACAAGTTGTAAAAGAACTGCTTAGTTCCCAAGCGGAGCAACAAGTCAAGGTCACGAGAGGGACCAGCGGAGATACCGTGCTACATGCTGCGGTGCGAAAGAAGGACGTCGACATCGCAAAGATTCTTGTAGAATGTGGCTGCCCCGTCGACTTACAAAATGTCGAGGGACAGACAGCTCTCCATATCGCTGCTTACGAAGGAGACGAGACCTTGATAAAGTTTCTTCAAACGGCTAAAGCTGACGCCAATATCGTTGACGCAaACGACCGCACGCCACTTCATTTGGCGGCTCAAAGAGGCTACTCCAACGTTGCCGAGTTCTTAGTGGACAAGCTAAAAGCAAACGTGAATTTGAGAACAAAGGATGGCAGTACTCTGATGCACATTGCGTCACAAGCGGGACATCCCGACACAGCACTGGTGTTCCTCAAAAAGGGCGTGCCCCTCCACATGCCCAACAAGGACGGTGCAGTTTGTCTCCACGCTGCCGCGAGAAAAGGTCACGTAGGTGTCGTGAAAGCGCTGCTGTCAAAAGGAGCCACAGTGGACACAAAAACGAAAGACCATTATACCGCACTACACATAGCTGTCAAGCATTGTAAACCACAAGTTGTGCAGATTTTACTGGGATATGGCGCTAACGTACAGCTGAGAGGCGGCAAGGCGGAAGAAACGCCATTGCACATCGCAGCTCGAATCAAAGATGGAGAGAAGGTCGCCGAGATGCTGATTAAGAGCGGAGCGGATGTGAATGCTCCAAGTGATAATGGAGAGACAGCCGTTCACGTAGCAGCACGGTTTGGTAACTTAAAAACACTGAGGCTTCTAATCAACGAGAAAGCAGACACTGCAAGAAGATCCAAGAATGGTGAATCTGCACTGCATCACGCTATCCGGGCCGGACACTATGCAGAACTGGAGGAACTGGTGCGAGTTCTGTTCCGGGTAAAGTCCAAACCTATTGCCAAGCTCGTCATTAATATGCCGACTGACAGAGGTGAAACTCCGCTCCATTACGCGGCGCAGCTTTCCAAGGCCAAGGTCAAAGAAACCGAGGATATTGACATTGTTAAACTGCTTCTTGAACACGGTGCTGACTGTACAGCGGGTTCACATCAGTCCATGGAAACGCCAATCCACGAATGCGCACGTTCAGGAAACAACGACATCTTGATCGCTTTACTAGAGTCCATTCCACCATCCAAGCTTCAGCTCACGGTCAATAAACGATCGTCGAGTGGTTCATCGCCGCTGCTAGTTGCATCACACAAAGGGAACGTGGAAGTCGTCCGCACGTTACTCAAGTACCACGCCAGGGTAGATGTGTTTGACGAGTCTGGCCGTGCCGGTCTACACGTGTGCGCCGAACGCGGCCATCTTGAAGTTGCTCAAGAGCTGCTTGAGCATAAAGCTTATGTGAACGCTAAAAGCAAGGTTGGGCTCACTCCTCTTCATCTGGCGGCAGAAAGCGGACACAAAGAACTAGTTGGACTTCTTGTCGCCAAATACAAAGCTAGTGTGGACGCCTTGACTCTGGAAAAGAAGACAGCACTGCATTTGGCTGCAGAAAAGGGCCGCTTACAGGTCTGTGAACATCTGTTGGAACTGAGAGCCGACATCAGCGCTCTGGACAATAAAGGTCAAACACCGCTTCATTACGCTGCCCAAAATGATCATTCAAAAGTGGTTACCCTGTTCCTGAACCATAAACCCGGTATCATGATGCAACAGAACGCGGAAGGCAGTACTTGTGTACATATCGCAGCCATGAAAGGAAGTGTATCGGTGATGAAAGAGCTTCTGAAGTTTAATCCTTCAGGAATCACAACGGCAAGAAACAAGCGTAAATTCGCAACGCCCTTGTTACTTGCCGCCAGCGGTGGTCACAAAGTTGTCGTGGAAGTGTTGATAGCACATGGAGCCTCAGCAAGTGACGAGGACGCGGACGGCATGACTGTTCTTCATTTAGCAGCTAAGTTCGGTCACGTGGACGTGTTAGAGGTTTTGCGCGGGAAAGTTCCTTGGAGCATGGCAGGTGTCAAGACCGGTCTGTCCGCACTTCACGTGGCTGCCCAGTATGGTCAGATCGAAGTAGTCAGGGAAATGCTGCTCAAAGTTTCCGGAACGATAAAAAGCGAGTCTCCTGCTATGGTGGACAATGAGCATGGACCGCGCTCAGACTATTCCTTCACTCCACTGCATCTAGCCGCCCAATCTGGTCACGTGGGTGTTGTACGATTACTGCTGAACTCCCCAGGAGTGCGTGTGGACTCAGCAACAGCGGTGCAGGGTTCCATTCCTCTTCATTTGGCGGCGGAGAATGGTCATTCGGAGGTTGTTAGTATTCTTTTGAGTAAGTCAACACTGCAGTTGCATGTCAAGGATAAAATAGGTAGAACAGCCATGCATCTGTCCGCGGCGAATGGACACCGGGAACTTATCTCACAGCTGATAGGACAAGGAGCAGACATCAACGCACCTGATGAGAATGGCTACGCACCAATGCACATGGCGGCCGAGGCTGGTCACGTGGAAGTCGTGAAACTGCTGGTTGAATCTGGAGCATCACCGCGGGCGGAATCTCTTGAGGGCAAGTTCCCAATTTGTTACGCGGCTATGCAAGGTCACCTGGCAGTTGTGAAATATTTACTGCAACAGGAACTCAATACCGAGCGTTTGTTAACCGATAGGAAGTTTTTGTTTGACCTGATGGTTTGCTCCAATTTGAATGAAAGCGAGTCTGTATTGGACTTCATTCTCCAATGCCCCGCCCCAATCTACGCTGCAGCCAAGCTCTCCAAACACTATCGCAACGAGTCCACGCGGGAAAAGGAACGCGCGCGTGATCTGTTGGCAGCGGGCGTCGTCTGCGAGAACATAGCATCCGAGTTGCTGTCTCTCGCATGCGCAGATAGCGCTGAGAAACTGCTGACAGCTATTGACGACCGCGATGTACCGTTTCTGGATTACCTTATCGAGTGTGAACAGAAGACCTGCGTGTCACACCCGTCTGTTCAGGTTTATCTCGGGGATGTGTGGCGTGGCGATTTCCAGTGGGATGACTGGAAATATTTCTTGCTGTTTACACTGTGTTTGATATGCCCTCCATTATGGGCGTTTCTTTGCCTTCCATGGAACGATCGCTATCATAAGATACCCATTATCAAGTTCATCTGTCATCTTATCTCGCATTTTTACCTCATTGCGTTGTTTAGCTTAACAGTCGTGGTCCCTTGGGAGGAGCTGACTGGTACCACACTCCTCCCTAGGTGGTACGAGTGGCTATTATTGATCTGGTTATCAGGATTATTATTATCACAGCTCACGGATCCGCATGACCGTGCGGGACTGGGCTGGATCCCGATCATTGTGCTATTTTTAAGCACGATTGGCATTCTGCTGCATTTTGTAGCCTTCGGTTTCCAAGGCGACAGTCGAATCGACGTTATCTACGCTCGGAACCAGTTCTTTGCGACATCCATGATGCTTTGCTTCGCACAACTCCTGGATTTTCTCTCGTTTCATCATTTGTTTGGTCCCTGGGGGGTGATCATCCGGGACCTGATGTACGACCTTGTGCGTTTCCTTGTCATTCTGTCAatcttcatggtgggttttaccGCCCACCTGGCAGCCGTGTATCGTCCAAAGAAACAAACCGGAACAGGAAATAGACTACAGCCTACCCCGGTGGATTTCTTTCACTGTTTTGAGCTGCTGTTTTTCAGCTTATTTGGATTGACTGAAGTTAGAAGTCTGGAAACCAATGACAACGCGACGTTTATTCTGGCCAAAGCTACGTTCGGGATCTATAACGTGATAACAATTATCGTTCTCATTAATCTGCTCATTGCTATGATGAGTGATACTTATCAGCGCATTCAAATGCAGTCCGACATCGAGTGGAAATTTGGCCGCGCCAAGCTGATTCGTAACATGAAGCGTTCCACCACCACCCCCTCTCCCCTGAATCTCGTTACGAAATTCTTCACTTACTTGCGCTTAATGTACAAGTTGAAGCTCAAATGTTGCCGAGCGGGAATCATCGATATTATTCGGACCAACGAACAGCTTCCGGAGAGTACGTCCATGAATCCTTTGTACGACACTTCGAACTCCTGGCTTCCGAACGGAGGCCTACATCATCACCGTAATAGCAGCTTGAGAAGTACTCGAATCGAGGACGTCATCGACTGGAAGATCCTCGTTAAAAAGTTTTTGGTTCTAAGAACGAACAGCAGCGAAGTTGCAGTGCATACTCAAGCCACTCGTGAGAAGACCCTTTCGCCCAGGGCTTCGCACGTGAACTTACGATCGAGGACTGAGACACTAGGACCAGGCCGGCCAGGTACTTCAATGGGTTCCACCATGTCCCTTCACAAAGTTTTCTCGGCCACAGTGAAGAGGATTGACGTTGTGTCGAACATAAGAGATGCGAGCGAAGTTTGA

Transcript

BRAKERRLHT00000032130

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R283	Short transient receptor potential channel 2 OS=Rattus norvegicus OX=10116 GN=Trpc2 PE=2 SV=2
Q9R244	Short transient receptor potential channel 2 OS=Mus musculus OX=10090 GN=Trpc2 PE=2 SV=2
Q9UL62	Short transient receptor potential channel 5 OS=Homo sapiens OX=9606 GN=TRPC5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001212 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002153 all species →	Family	Transient receptor potential channel, canonical	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR050889 all species →	Family	Dendritic Spine Regulation and Scaffold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24166 all species →	ROLLING PEBBLES, ISOFORM B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005262 all species →	Molecular Function	calcium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0070588 all species →	Biological Process	calcium ion transmembrane transport	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04984	TRPA1, ANKTM1; transient receptor potential cation channel subfamily A member 1	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.