Gene detail

Detailed information of BRAKERRLHP00000034533.1 in Dendrophyllia cribrosa

Genomic Location: not available for this species
NR annotation: CAH3037082.1, unnamed protein product [Porites lobata]
Species Dendrophyllia cribrosa · all data for this species · gene families

Sequence

CDS

BRAKERRLHT00000034533

ATGGAATGCGGGAGTTCGGCTGACGCTGCTTGGCTTTCGATCATCACCATATTAGTTGCTTTCCAGGGATTCAGCTTTGCCATTTACCAGGCAGGCATCAGATCATGCCACTCCTTAAACCCCCTGCTTGCCCACGCCCTCATCAACTTCACTGTGGGCTCAATTTTATGGTACTGTGTGGGTTATTCTCTTTCATTTGGAACATCACAAAAGGGTTTAATTGGAAGCCTTGATGATGGATTCTTCTTGGGTGTTTCTGGTAAAAACTGTTCATCACATTCAGACTCAGTTCCAGCAATTTCTTTTGCAAGTTTTGAAATGATGCTGGCTATCGTCACCCCATTTATGTTCCTGTCTGCTTGGGCAGAGCAAATAAGCATACTTGGAGCATTGGTTGTTTATTTAATGTGGCCATTTTTTGTGTACTACCCCCTGACTCACTGGATTCGAGGAAGAGGATGGCTTCATGACTACTTTGGAATTGTAGACCAATCAGGAAGCTTGACTGTGCATACTTCAACAGGTTCTGCTGCTCTTGTTTTCACCATAATCCTTAGACATGTTCACAAGAATCTAAAGACACAGAATAAACATGAGCAAAGGGCATTGAAGCAAAGGAATCCTCGTGATCAAGATGTCTTGCTTATTGCTGGAGGACTTATCTCTTCTCTGGGATGGTATTCTATAAATGTTGGGTCTGTGCACAGGTTTAGTGATGCTGCCATTCTGTCACTTGTTAACTCTCATCTGTCTGTCTGTGCATCTTTACTGAGCTGGGTGATTGTCACCTATGTAACCAGGAAAAGCTTAAAAGTGACGGATCTGCTACAAGGCATTATGGCTGGCCTTGTTGGTGTGAGCGCCTGCTCTGGTACCATAGAGGTCTGGGCATCCTTGATAATAGGGCTTATCGTAGGATCAATATCATCTGCTGTCTCGTGGTCTGTTCAGAAATATCAGCCATTATGGACCAGTACCGGGCGGCATGATATCACATATACCCATGGTATTCCTGGCATTGTCGGGGCGGTGACAGCTGGTCTGTTTACAAAGGCATCGAAGGATCTCAACAGTGCAAATGGTGCATTTTATTCTAATGGAGCACAGCTGGGTGTACAGCTACTGGGCGTGGTCACCACTGTCACGTGGTCTTTATTTTGGACATACCTAATGACGTGGATTATAAGATTAACTGTAGGCTTCAACGGCTGTGATACAAACAAAGCTTTAGGCTCGTATGCGACCTCGGATAATTCAACGATATACCTTTGGGGGAAAGAAAAGGAGTCTGTCCGTAATAAGATTTTCAAGGCGGTGATTGAAGGTGATTTACAAGAGCTCGATGGATTGGTTGCTAAGCAGGTGCATTTTGGCGTGCAGGACTTCGACAAACGAACACCGCTTCACGTGGCCTCTAGCCATGGACATCTCCATTGTGTCAAGTTCCTTCTACGACAGTCTGGTGTGGACATTCACGCAAGAGACCGCTGGAGAGCATCACCGCTTTCTGAAGCCATACAGTACGGTCATGATCAAGTGGTACAGTGCCTGTTACGTCACGGAGCAGGCTGGTGTGAAGACGGAGTAGGGGACCTATTGTGCAGTGCTGTAGTGAAAAACGATGTCGAGGAGCTTCAGCGGCTGGTGTTACTGGGAGTTGATGTTAATGCTCCAAACTCAGATGGAAGTACAGCACTCCACGTGGCAGCTACCGTGGGCAGCAGAGGGGTGGTGCAGTATCTGACTGATCACAGAGCAGATATTAATGCTGTTGACTCGCTTGGGAATGCACCTTTGAATTACTCGGACATGCATGAGCACCGCGCGGTCAGTCAATTACTGGAGGGACTGGGGGCTAGGCGGTTATCACATCACTACAGCATGCATGAAATCTGTGAAGTGACAAGCACAGGAAACTTACAGATGCTAAGACATATGGTCCATAATGGCGCTACAGTCTGCTACAGAGATCTGAACAAAAGAACGCCACTACATGTCAGTGCGGCTGAAGGACATTTGGATGTCGTGAAGTTTCTGTTGTTGCAACCCGGTACTAACATCAATGCCAGAGACACGAATGATTTCACTCCACTTCTCGGTAAGGTGTTCtcagttttattttattgcttgtttgttttattcACTAAGGgccgtagcatgaagcaacgTTGGAGTGTTGTAAAATAG

Transcript

BRAKERRLHT00000034533

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BLG4	Ammonium transporter 1 OS=Dictyostelium discoideum OX=44689 GN=amtA PE=1 SV=1
O28528	Ammonium transporter Amt2 OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=amt2 PE=3 SV=1
P54147	Putative ammonium transporter sll0108 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=sll0108 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005807 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF00909 all species →	Ammonium_transp	Ammonium Transporter Family	Family	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR029020 all species →	Homologous_superfamily	Ammonium/urea transporter	Interproscan
IPR001905 all species →	Family	Ammonium transporter	Interproscan
IPR024041 all species →	Domain	Ammonium transporter AmtB-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43029 all species →	AMMONIUM TRANSPORTER MEP2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008519 all species →	Molecular Function	ammonium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0072488 all species →	Biological Process	ammonium transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03320	amt, AMT, MEP; ammonium transporter, Amt family	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.