Gene detail

Detailed information of BRAKERRLHP00000034886.1 in Dendrophyllia cribrosa

Genomic Location: :...
NR annotation: XP_020605772.1, E3 ubiquitin-protein ligase TRIM71-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERRLHT00000034886

ATGTCTTCATCTATAATTGCCGGAGTAAACGTCGAAAGCATATCAAGACATCTGAATTGCAGTCTTTGTAAAAGGCTGATTCGAAACCCGAAACTTCTTCCATGCTTACATTCGTTTTGCCAAGTTTGCGTTCAAGGTCTTGCCGATAAACTCGCTCCAAATGAACTTCTGGTCTGTCCGCACTGCAAAACAGACGCAGACGTTTCAAGAGATGAAGTTGAGGCTTTGCCGGTTAATTCCTTCTTAGATAACATGTTAGATATTGCATTGATAAATTCGAGCGACAAAGAACCCGTTCCTTGTTCGAATTGCGACTCCGTGTCTGCAGCAACATCAAGATGCGTCGATTGTGGGGAGTTCCTTTGCGAAAGATGCTACAGTGTTCACAAAAGGATTCGTCAGACGAAAGAACACAAGATTCTGACAATCTCCGAGCTTCTCGAAAGCAATACCGGCGAAGATTTACACAGGCCGGCATTTTGCAGTATCCATCGCAGCGAGCAACTGAAATACTACTGCGAGACGTGCAACGAAGCAGTATGCAGGGATTGTGTTCTTATCGAACATCGCCAGCACAAATACGATTACATCAAAGActcgaagaaaatacaaaaacagAAGACGATTATGGAGAACTTGTTTGAGCAGTGCGCGGGAAATGTTCCAGTACTGGAAAAGTCGATAAGAGAAATCCAAGGCATTTCTGATGCACTACACGGCAGACTCGCGACAGTAAAAGCGGAAATTCGTGAGACAGCTTTACAGCAAATTAAAGTTATAAAGGCAAGAGAGACAAAACTTTTGACGGAAGTACAAAAGATTCACAACGCCAAAGCAGCTATCTTGCGGCGCCAAAAAGACAAACTGGAAGACGATTTCGCTAAGTTTAGAGCAGGCTGCGATTTTTCAGAGCAGGTTTTAAAATACGCCAACGAAGTGGAACTGCTCTCGCTTAAAGCTCACATCACAAAGAGATTAACAGAATTGAAAAATACTGAACTTGATTGCAAGCCACACGAAAACGCTGAACTAATTTACGAAGTGGATAATAAGGAAGCTGAGAACACGCTGTATCAGTCTTTGGGTAGTCTAAAAGCTGACGGTCAATATTTGTTGCTAGAAGACATCGAGATTCCTTCCACAAATGGAAGTGCGAACGAATCAGAATATATGACTCCGAAAGAAGTTCCAATTTCCGTGGAATTACGAGACGTCAGCGGAGTTTTGCTTCCTCCCGAAATAATTCATCAAGCTGATGGTCAGTCCTACACAGCATACCATCCATACTTCAATGGCATCTTCTCATTTGCTGTGTTCGCGCGTGGACAAATGGTGGAAGGATTCCCGCTGGACATAAACATCGGGGACATCGCGCCTCGCGCGCGAAGCGCAAAGAAAGCTATCGCGGGGAGTGGGTCTAAGTTTGGAAGGCTAAGTGATCCCCAGGGGGTGGCAGTGGATCAAGACAGTCACGTCATTGTTAGTGACTCGCGCAACCACCGCCTCCAGGTGTTTGACATGGATGGGAATTTCCGCTTCCGGTTTGGGTCGCCCGGAAGTCGCGATGGTCATTTCCAGTCTCCTAGTGGAGTGGCTGTCACCCGCGAAGGGAACATTGTTGTTGCGGACACGATGAACAACAGAATCCAGattttttcgaaagaaggcAAGTTCATCAAAAAGTTTGGCAAGGGATCCATGCAGAGTGAACGCTTATACCAGCCGTACGGCTTGGCAGTCGACAGCGAGGAACGTCTGTTTGTTGTGGATCGTGGCAATGCTCGTGTAATTGTTTTCAATCAAGAAGGCCAGATAATATTGTCATTTGGTTCCCTTGGCGATGGTAATGGTCAGTTCAACTGCCCAACTGGTGTAGCGGTCGACAGTAAAGGTCACGTGATTGTGACCGACTTCGGAAACGATCGGGTTCAGGTGTTTAGCTCCAATGGTCAGTTTTTGTTTAAGTTCGGGAAGAGCGGAAGGGGCGACGGAGAGCTCAATTGGCCGACCGGAATCGCCACTGACGCCGACGATCACATCATCGTGAGCGACTCGTACAATCATCGGATACAGATATTTAACGATGATGGTTCGTTTCTGACTCGATTTGGAACCGAGGGAAATAATAGAGGACAGTTCAAAAGGCCCGAGGGTGTGGCCGTGACAACACAGGGAAATATCGTTGTTGCGGATTGGGGGAATGATAGAATACAAGTTTTTTAA

Transcript

BRAKERRLHT00000034886

Protein

Uniprot

Uniprot term	Description
Q1PRL4	E3 ubiquitin-protein ligase TRIM71 OS=Gallus gallus OX=9031 GN=TRIM71 PE=2 SV=1
Q1PSW8	E3 ubiquitin-protein ligase TRIM71 OS=Mus musculus OX=10090 GN=Trim71 PE=1 SV=1
D3ZVM4	E3 ubiquitin-protein ligase TRIM71 OS=Rattus norvegicus OX=10116 GN=Trim71 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR003649	Domain	B-box, C-terminal	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan