Gene detail

Detailed information of BRAKERRLHP00000036980.1 in Dendrophyllia cribrosa

Genomic Location: :...
NR annotation: CAH3023670.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERRLHT00000036980

atggcggctgaaCTATCGACTTTAGTGAGTTCATTTCTGGACACAAATCCAGAGACTTATGCGCCATTTCTCCTTGATTGTGTTAATTCAAAGCAACACCTTAACACTGAGaaaattcCCGATGGCTGGGTTGGCAAGGTCAATACTTTACTAAATTCAAAGACTGAAAGtTGGTTAGGTGTGTGTCTTCTTGGAATCACTGTTGATCAATGTGACACAGACACATTCACAAAGAATTGTGCATCTTGGCTAAGAACTATCCTGCAAATAATTCAGGTGCCAGACAGATCAAATATCATACAATATTGCACTAAACTCATTGACGACATTTTACGATATGCAGTAGAGTTTTCAGAGCTTTCAAGAGAGTTGGCAAACTCTGTTATACCTGCCATTGTTGGTGCTGTGTTGTCCAATAAATGCACAGATGTGTCGGCTGTTTTGTCTATCCTTTCCTCCTGTATTCGTCACTTTCCTGGGCCAACTGGACCATCTAGGaatCAAATTGAGAAATTCCTTTTGCCACTCTTAAATTCACCATGTGAAGAAACAAGAAAGGGTAGCTGTCACTGTTATGCCTTGTTGCCGAGGTGCAGTCGCAGTGGTGGCAGTGGAAAAAAGCAAGTGTGTCCTTGGAAAACGCAGTGGAATAAAGTTCTGTGTACTCTTCACAAGTTATTGGATGCTGCCTATGAAAATGTGGAACCTGttcccTCCAGAACTTCCCAGGAATCTTCCTGTGAGTCAGAAACATTGCCACTTGGTGAAATTCCACAAATTGAACCTGGTCAGACCTACACTCTTGTTACCAGATGTAATACAATGATGTACTGTCTATCTGTAATGATTAGAGAGGAGTACTTAAAAGTTGTTACAGTTCCCATTGATGCCACTGTTAACCTTCTGCACAGAATTGTCTCGGTCACAAGTAACTCTCTGAAGAATGCAGTAGTTGTTGAATCAGTGCTGCTGAGAGCAAGTTTACCATTGATTCATACAAGTGCAGTAGATCTGTTAACTAACCTTATAACCAGATGTGGAACACTGATGCTGCCATACTGTGACTTAATAATGAGAGTCCTGGTACAAGAACTTACTTGGACCAAATATCAAGACCCTACATATGGCCAACACAAACCTTACAGGAAACTGAGGTGTTGTGTGTATCTGTGTATTGAACACTGGATTCAGCTGACAAACAGCCTGCCTGAGGAGGGTGGTGTGGTGGCTAAATTGATGCAGCATGTATTGGATGACATAAGGCCTTTAGTTTCACAAACAAAGCTATTACCATCTACTCATACTGGAAGTCAACAGATGTCTAAAAAGGCAAAGAAAAGGAAACTGCTAGATGATGTTGACCAGTTACTAACAGGTCAACAAAAGTTAGATGCAAAGGCTAATGAGATGACAACTTACAGGGCACTTAAAGCTTTATCTGCAGTACTGATTGCTAGTGGAGGTGACATTCCTAAAGATGCATTAAGGGAGATTCAAGTGTGCATTATAAAGCTCATTATTCAGTGTCAGCAGTCACCATATGATTCTTTCTCCATACCATTCACAAGTGCTGAGTGTCGGCAGGCGTTGTACCATGTACTTCAGTGTTGTCTGCTTACAAACTCCCCTTATGTTCCATCACCTATCAATCACGCTGTCAGATTATTCAGTGGGGGACTTCAGGATGCCGACCTCAAGGTATCCAGTTTCTGTCAGGAAGCCTTAGCTGTTGCTAATTCCATCATCCATCCAAGGTCCTTCCCACAGGTGTGCTCTGCTCCTGGGCCATTATCACTTGCTACCTCTGAGCACCCATCTACGAATGGACTTGTGGACCGTCATCAAAGTACATCTGAGTCATACTCCTCAAGTTCACTTAATATTCAAATGACAAGTGAGAATTCTTTACCACAGCAAAGTATTTTGGACAGAGGAGCATTTGAAAATGGGAATGGTATTGGTTATACACAAACAGAGCAAAACACCAGGAGATATACAGAAACCTTTCAGGCTACTGAGGGCAGTGATGCTGTTGAAGCATCTTTAATCCATGTTGGGAACAAATCTGGAGAAGAACTTGAACCTGGTACATCACACAAACATATTGAAAACTCTATTGCCAGTGGAAGTGACAGTACAGTTGGTCAAACAGAAAAATCACACAGTGAATCGGAACACTCTTTAGCAACAAGCACTGAAAGTCAATCAGGAATACAGCTTTCTGCTTCAAGTTCTAACATGTCAACAGCACAACTGCTTAATCAGGAAGGGTTCATCACTGCAAATACAAGTAAAACATTGTTAGAAGATTTTAACCATGGTACTGAAATTAGGGAAGGTACAGTTTCTTCTTGTCAGCCAGGAGAGGTGCATGACACAAGTGAAAGTCTCGGCTCATCTGAGCCCAAGAGAAGGAGAATTAATGACGATTCCAATGTATCTAATGAAGAACTGTTGAAGAAAAGTCATTCTGTTGATACACCTAGCAAAGAACAACTGGTTCAACGTACTGAAGAGAAAGAATCTGTAACCATTGAGGATAATGATGGTGACGAAACTGCTGAAATGCTGGCATCTTTTGTTGACTCATACCCAGATTCTGATGAGcaagaatttgcatga

Transcript

BRAKERRLHT00000036980

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08166	PELP1_HEAT	PELP1, middle domain	Repeat	Interproscan
PF08167	RIX1	rRNA processing/ribosome biogenesis	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012980	Domain	PELP1, middle domain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR012583	Domain	Pre-rRNA-processing protein RIX1, N-terminal	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34105	PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16913	PELP1, MNAR; proline-, glutamic acid- and leucine-rich protein 1	-	Ribosome biogenesis	ko03009	deepkoala