Gene detail

Detailed information of BRAKERRLHP00000037086.1 in Dendrophyllia cribrosa

Genomic Location: :...
NR annotation: CAH3192417.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERRLHT00000037086

ATGGCGAAGGCGACCTTGGCGGACAGTTTAGGGAAGCATTTAGAATGCGCCGTGTGTCTTGAGCAGTACACGGAACCTAAAGTTCTGTCCTGTCTTCATTCCTTCTGCAAACGATGTCTGCAAAAACTTTTGACTCGAGCTGGAGCGGTGTTCAAGATAGATTGTCCAATTTGCCGTTCAAGTGCTGAGATTCCACATGGACAAATTGATTTGCTGCCAGTCAATTTCTTTGTCAACAACTTATTATCAATGGTTGCTCTTCATCACGACTCTGATACTGGTAAACTTGGATGTGATAACTGTGACAGTAAAGAACCACCTGTCAGTAGATGTGCAACTTGCTCACtttttttgtgtgatttttgcACTGAAGCTCACTATCGAGGACGTAGCACCCGTTCACACAGCCTGATGTCTCTTGAAGAAGCAAAAAAGATGGGATCGGTGGCGGTAACAAAGCCAGCAATCTGTAAAGAACACGAAGGAGAGGTGATGAAACTGTTTTGTGAGACATGTGAAGAAGCTATCTGCAGAGACTGCACCATTGTGAAGCATCGTGATCATAAGTACACATTTGTCAAGGATGCTTTTCCAAAGCACAAGAAAAGCTTGCTAAAAATTCTGTCTgaggcaaaaacaaaagcaactgTTCTTGAGAAAGCAGTAGTTGATGTTTcaaaaatggaaagaaatgtATACTTTTGTGCAAAACAGACTGTACAAGAAGTCACTGACTGTTTCAATGACCTGACAGCTTGTCTTGATGGTCGCCGCACAAAATTGATTGGTAAAGTAGAagaattcaagaaatcaaaactTCATTCTTTGAAAATTCAGAAAGAGAAGCTAGAAACATCTCTTGCGAGTGTACTAAGCAGTGTTGAATTCACAGAAAAGGCTTTGGAAAATGGCAGCGAAGTTGAGATTTTGAACATACAAAAGCAAATGTCAAGTCGATTGCGTGATTTAAACTCCGCCAAATGGCAGTTGGAACCATGTGTTAATGAAGAATTAAAGTGCAAAGGTGACAACAACCAACTGAAGCGTAGTATTGCGACCTTTGGTGCCGTTACCGATGTGGTGACACATGCTGCTATTTCAACAGTATCTATGGAAAATGGACAAGAGGGTGTGATGTACAGTTCACTCTGTGGACAGACAGTTAAATTCAATATTATTGCGAAGGAATGCAATGGAAGGAAACGAAAAGAAGGAGGTGATATTTTTGAAGTTTCCATAGGAAACGAAATGCAGAAAGCAGAGGACTGTGGAAATGGTATGTACAGTTTTTCCTTCACTCCCTTAACAGCAGGTCAATACAAGTTGTTTGTGCAGATGAAGGAGCATCATGTGCAGGGAAGTCCTTTTCAGTGGTGTGTTGAGAAGTGGAATCTACGGTCATTTGCTTTAGACAATAGTGAAGGTCAATTGAATTTATCTGAAGAAAATTTGACAGCTCAGTACATTGATTTGGCACTTGAAGCAGAAAAAGAAGAATGGGTAGAAGAAGAAtgggaagaagaagaagaagaagaagaagaagatgaagTGACATATGGGTCATCTGGTGAAGCTAATTCTGACAGAAAACTAACTGCTGTGGGTTCTGTTGGTTTTAAGAATGGTAAACACATGTGGAAAGTTCAGATTCATGGTAAAACCATGCAGGGTTTTAGTTTTGGCGTCACAAACACCAACAGAGACAGGAATGGCAAACTAGTTAAACTTGGAAACAAGTGGGTGTGGAgtgcaaaacagaagcaatatCCACTGCTGTCAGGTGCTCAAAGAGCTGCAGCGAGCAACATTACCGACTGTAAAAATGGTGACATTATTGAACTGTACTTGGACTGTGAGGATAGAAAGCTAAGGATGTACAATCCACGCACCCAGCAATCGGGCACCTTGGGAGGAGTTAAGGGAGAAGTGACTCCAGTGTTCCACATGACCACTTATGGGGATAAGGTTTCTTTAAAGATACCACAAAAGGCGTAA

Transcript

BRAKERRLHT00000037086

Protein

Uniprot

Uniprot term	Description
A4IF63	Tripartite motif-containing protein 2 OS=Bos taurus OX=9913 GN=TRIM2 PE=2 SV=1
D3ZQG6	Tripartite motif-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Trim2 PE=1 SV=2
F7H9X2	Tripartite motif-containing protein 2 OS=Callithrix jacchus OX=9483 GN=TRIM2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003649	Domain	B-box, C-terminal	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR001870	Domain	B30.2/SPRY domain	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan