Gene detail

Detailed information of BRAKERRLHP00000038908.1 in Dendrophyllia cribrosa

Genomic Location: not available for this species
NR annotation: CAH3177015.1, unnamed protein product [Porites lobata]
Species Dendrophyllia cribrosa · all data for this species · gene families

Sequence

CDS

BRAKERRLHT00000038908

ATGCATTACCAGCATCAAGAGGAAAAAGGGTTATTAGAAGCAAGTCAAGGCAGTAAGTCAAATGACACCTCACTTATCCAAACACAGGACCATGTGGTCAGAGAACTGCAGTCTGGGTCTGGAATTTCCAGGAAAGAGAAACGGGAAAAAGCCCAGAAGGACAAATGGCAAGATGGCTGGAAAACCTACAGATCTATGATTAATTTTTGTGCTGTATATAAGACAAACTGCATGCATTACCAGCATCAAGAGGAAAAAGGGTTATTAGAAGCAAGTCAAGGCAGTAAGTCAAATGACACCTCACTTATCCAAACACAGGACCATGTGGTCAGAGAACTGCAGTCTGGGTCTGGAATTTCCAGGAAAGAGAAACGGGAAAAGCATATTGGGCCCAGCTCAGAACCGTCCTTCCGAATTCTTTTGGAGGGATGCACCTTGCTGGGTATCCATAAGACCAGAACAACTGTCCTGCATCCCCAGTCCAACGGCACCGTAGAATGTTACAACCAAACTTTAGAGTCAGTTGGCTTCATTGTTGAAGTTCACCAGGAAGAATGGGATCTGCATTTGCCACTTCTACTAATGTCCTATCAGACAGCTGCGCATAAAACCACACAATTTACTCCCACCATGCTAATGTTTGGAAGAGAACTGCGCATACCTTTGGATCTGTTCATTGGGATTCTGCGTGAAGAACTTGAGAACCAAAGTTATCTTGAGTATACAGAGAGACTGAGGGCAGCAATACAGACTATCAATGATTTTGCACGAGAGCATCAGCAGACCAGTATGAAGAATGAAGAAATGgCCATAATAGcaaatgaagaagaagaaggataTGAAGGAAGAATTGATCGAAAAGTGATAATCAGGTTACTTGATGATCTCAGTGCTGAAGGATTAATTAGACAACTCAAGACTGTTATTCATCATGGAACTGTTTCACAAACGGTGGATCTTTTCTTGCATTCGTCCATAACTAATGATCACCTTGACGTAGCACATACTTTGGAACAGTGTCGTGTTCGGATAAGAGATGAATCTTATAAAGCAGCAGAGAAACAAGAAAAAGCAAGACAAAATGCAGAGGAAAAAGAGCAACGAAAACTTGAGAAAAAAGCAAGAGTATtggaagaaaaagagaaaatgaaacttgaaaagaaggaaaaagacATTCAAAGGAAAGCACAGCATGAACATGAGAATGAAGCTTTGAATGAAAAAGACAAAGAACAAACGGCAGCTACAACACTGAAGTATAAGGTTTCAACTCATAATTATGGCTTTCTTCCAAGATTTCCCCGAATTCAAGTTATGCATGAGCTGGTATGGAAGCTTGTGTATGGCGATGTCATTCAAGAGACAGATGCAGTTGGCAATAGTCAAATAGAAGGAAACTTTGATCATAATGATGAGTGTTTGAAGAACTTAAAACCCTTGGCAAAAGTGTATGATGCAGATGGCCAGCCTCTTCAGGGCTGGTTTCGGTTTTGTGATTTGTTTAAAGTGATGCCTTTGATCATACTTTGCAAGACAGTTGACATCACTGACAAGaTTGAAGGTCTTGATGAATATGCACTTGATCCTGTAAAAAAGTGTACCCTCATCTGTGATCTTCCTCAGCCCCTCAGAGGCAGAATCAATGAATATCGGAAAGTGAAGTCTGCTCCACTGGATCTACTCAGCAACATGGCTCAGATGGGTTTGATTACACCTTCTCTTCCATTTCCACCCCGTTTTAGAGAAgtAAAGTTGTTTGTGCACAAAGGTATTAAATTGTTGGACACTACTATCTCTCTGCCTGGCTGGAACACTACTTGCCCACCACCTGGCAAAACATTTCCATCTCACACTCATATGTTTAGAAGCATGGCAGCTTTGCGGAGTTATTGGCGTGACCTGAAATGTGTCTGTCTTAATACACCTTTGGgAGTACTTCGTAATCAAGGAGGAAGCAATGTGAAAGTGCATTTAGACAGTAGATATAGAAGACTTACCTCCTTTGCTAGGGAAGAGGTAGATGAAAACAGCATTGATTTGCCATTTGGAGACCACCTTGGTGCTGGAGGACTTGATAGGGGCTTATATGGTCATGTACACAAGAACTGGACACGCTTAACGACAAAATCGCCTCTTTCACCACAGGCAGTAGTCCAAGAGAAACGGAAACTACCAACAACAACAGATATTATAGCAGCTGAGGCACATGTTGTAAATTCTGGCAGTGTTCTTCCAAAAGATGgtgaaaaacaattttttagtGTAAGAAGAGCAGAGACCAGAAAACAGGCAAAAAAAGGAAGTCTAAAGCAGCAGAAAAAGAAACGTAAAAGAAAAGCGGAAGATTCAGAAGAGATTAAAGAAGTTAAAAAACGCCGACCTAATTTATCTGAAAAAGGTAAAAATTCTGTTCAGAAGGAAGACAAGAAGGCACATTTGAGTAAAACTGGACGCCTTAATTCAGGAGAGACTAAAGAAGTTAAAAAAACCCGAACTAATTTATCTGAAAAAGGTAAAAGTTCTGTTCAGAAGGAAGACAAGAAGGCACATTCGGGTAAAACTGGACACCTCAATGCAATTGATGAAGAGGACAGGAATATTTTGGCCAGAAAAGTAGCTGAAAGGATATCATTTTCAGCTGAAGAGGACAGCTGGTTGCTGCTGTTCCGTATTGCTCTTGGTATCATGAAGAATGACACGTCTCGTTTTTATCCATTTGTCTGTATGAGAAACATATTACACAAAACATGTGCAGCAAGTTTGGACAAAACGGCTCCCAATATTCAACGCAGGATTTTAAAACTGATGAAGAGTCCACAGTCACAAATGACTGTGAAAATTTGTGCGGTTGAATGTGCTCATGATGAGTCATTTCAAGGATTTGATGATCCAAATGCTGAATTTGAAGGAACGTTTAAGGAAGTTGTAAACAGGTTAAGGCAGAAGTTTAGCTCCTCAAGTTTGTCTTGTGATGGAGATCTCACATTAGTGTCTTCAAAACAAGAACTTCATGATAAGTACAAAGTTCAAGCTCTGGTTTCAAAGGATtcGTGTTTGTCAGATCAGCAAATTGTATCACTGGGGCCTGTTATCCAGTCTGTCACTGATATTAATAAAGCAGCAATCAGAGATCAGATTCAGATTGCTTTTACAACACCTAGGGAATTGTATGATGCTTACAGAGTTTTTCAAATGTTTAACTCTTTTAGAAGGCAACAATACGTTTTTGCTAGACGTGGAAGAAATGTAAGGACAGCTCTTTGTGAAGTAATTGGACAGGAGGAGCTTCAATTTGTGTTTAAAGACATGCAGGCGAAAAACCTTGTCAATAGAAAGAAATCATTTGAGAATCGTACCAGTCAGTTGACAAGATCCTTGCCCTTTGCTTCCTTGACTTATCGGCTCAGCTCTGTATATCATCGTCTCTTCCAGCAAGGATTCAAGTTGGTTACATTTTACAGAGATTGTGCAAAATTCTGGACTCAGCTTATAAATGGAAAAGAACATACCTTAAAAGATCCTATAACCACTGCCTCTGCTAGCAGCTGCTCAAGTCAAGGAACACTAGACATTCTCACCCAGGGCACCATGGAAGTCAAAGCTAAGAACACTTGTGGTGGAGATGTGGCTTGTATTCTTTCTCTGTTGGCAACAAACAAGGTGTCTGTTGAGGTATGCATTCCTGATGAAATCCTTAACCTTGATCCGTCTGAGCAAAACACTGGTACACAAGAACAAACGAGTCTGGAGACAGTTGATGACTTTCCTAGCGTCCAGTTGCCAGCCAAGGCACCTTGTGAAGAGAGAAGTAATTTTTCACTCCAGAAGAAGAGAGCTCCAGATACTACTGAAGTaacaaagagaaaagaaaacgcTTCCGTTAACAGTACAGAGAAAAGTCAACTCTCTCCATCCACTGCCGTGCCTCAAATGAAGAGCAGTACAGCTGTCCAGTCACCTTCACTAATTAATGAAAAAAAACCTACAGAGAGAAGTCAACCAAGTAATGTGATACCATCTCGTAAATCAAAACCCCATGGAAAAGGAAAACCTGGGGCTGCTCCATTAACGACAGAGAAAGAGGCGGAAAAACGTGAAGTTTTAATCTTGAATTTACCTTTATCAACAGTCACAAAATTTACAAGTGCTTACGATCCAACATCTCTGAAAGAAAGTGGTGACTATCTGACAAGCTGCATGGAGGCTGTTGAGGTAGAACCGAAAACCTCTCAGGTCAGTGAAGCTGTACCTACAGTTTCAGGAACATCTCTAACATACAACAGCACCTCATCTCGATCATCAAGAACAGCTCTGATGTTAGCCAGGGGTGGTAAGGACCCATATGTATCTATTAACCAGCTGCCAGCCAGGGCTTTTAACACCCATGACTTTATGACTCTGCACCACTGCAAAAATGTGGTGAGATTAAAAGAAATCAGTGATGATAAAGCACAAAATGCGATTGAAAGCGATGAAGAAAGAATTGCAGAAGGATTGTTGGTAACAAAACCAGGTGTCAGGTTAACTTCAACCGTAGAGAAACGTTTGGGGAGAACAGTTGCTGTGAGTCAAGATGCAACTGATGAAGTCAGTCCTACTTCCTCAGATGATATTCTTGATGATACTGTCACTTCTCCTATGACTGTTTCTGTGGCTTTGTCCATAGAAGAGTATTTAGAGCAGAGTAAAAGAGAATTTGGTTTTAATGAAATGGATGCCATGCTGGCGAGATACATTCACAACATTGTTGACGAACACAAGGAGTttggttttcctgtggtacGGTTGCAGGAGAGAATCCGTGAGAGCCATGAACAAGAATTGAATTCATCACGATATTCATTTAAAGAACATGTGAAGTACTTGTGTGCAGCCAAACTGctgtACAAAGTTGGTGTTTGCGAGGTTAGTCTAGTTACTGCCAGCTTTGTGAAGCCCTGGTGTGTGACATTACTCAAGCCCAAGAGCAGTTCCATGGCAACCAAACCTGGCAAAGATGTTGGTGACAAATCTGATTCATTACGAAGCAAGAACACAGAATTAGGTAATGACAGGTCAAGCCAGGAAAGAGAAACAGAAAGCAGCAATTCAAACAATGGTTTGGAAATAACCGGAATTATCAGAAAAGAAACAACGAGTGAAATAAGTCAATCCGGTTCTCCCGTGATAACTGAATGCAGTTCTTCGTCATCACTTGATGCGGATACAACTCATCGGAAAAACAATGGTGACACTACAAAAGATACAAATGACCGATCAGACATGGCCTTTAAAGCAGTGGATGATTTATCTTCTGAACAGTTGGAGGATTCAGAAGTTCAAAAAAAGAAATCCAAAGTTAGGAATTTTGAGTGCTACTCAGTGATTTGTCGTCCTTGGATCACAATTGATGGTACCACTAGTCAACAGCTACTGCGCATGTTCAGGGAGATGGTTCTGATGTTGATTCTGGACAATCCTGGCATTCCGGAGGCTCAAATTGCAAAACATGTGTTTGAAGCCCTACGACCAGCGGCGTTACACGATATTCTtgagAGTCTTATCCTGGATGAGTGTATCGTTAAACATGTGCTGAAACTGCCCCCTAAGATGTCTCTTTTCGGTGCATCTAAACCAGCGGAGCCGACTGAAACCGTGACTTTCTACACTCCGACAGTTGACTGCATCTTGCGACTGGCCACAAGCAAGAGGACGGGCTACACATAA

Transcript

BRAKERRLHT00000038908

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63505	General transcription factor 3C polypeptide 1 OS=Rattus norvegicus OX=10116 GN=Gtf3c1 PE=1 SV=1
Q8K284	General transcription factor 3C polypeptide 1 OS=Mus musculus OX=10090 GN=Gtf3c1 PE=1 SV=2
Q12789	General transcription factor 3C polypeptide 1 OS=Homo sapiens OX=9606 GN=GTF3C1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001719 (this species only)

Pfam domain

No Pfam domain signature was detected for BRAKERRLHP00000038908.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR044210 all species →	Family	Transcription facto Tfc3-like	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15180 all species →	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000127 all species →	Cellular Component	transcription factor TFIIIC complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006384 all species →	Biological Process	transcription initiation at RNA polymerase III promoter	Interproscan
GO:0042791 all species →	Biological Process	5S class rRNA transcription by RNA polymerase III	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15199	GTF3C1; general transcription factor 3C polypeptide 1	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.