Gene detail

Detailed information of BRAKERRLHP00000038912.1 in Dendrophyllia cribrosa

Genomic Location: not available for this species
NR annotation: CAH3179268.1, unnamed protein product, partial [Porites lobata]
Species Dendrophyllia cribrosa · all data for this species · gene families

Sequence

CDS

BRAKERRLHT00000038912

ATGACTCAGGAATGCCAATACGTGTCATTCAGCAGCAGTTTTTCCAGTGGAACTCCTGTGCGAGTGTTTGCTTCAGTTAATCATGGAAACGAATCATCCCAAGTTCATGATTCTGCTTTTGTGTGGGTGGAAGATGTGACAACAAGCCGTTTCAGGGCCTGTCTTGTGACAGGTGGGCAGGGATCTGGTGGTAACGGCACTATCGATTGGTTTGCATTCCAAGGTTCGCAATCGGGAGTTGAACATGGCCAGACCAGCTTTACTCTGTTTACCACTGGAACAAAATGTAACCAAGTGGCTTTTTCACGGGGTTTTTCATCGGTTCCCAGAATTCACGTGACTGTCAAACATGGAACTTTGAATCAAAGAAAAGATGCAATGAATGTTTGGATAGAAAGCATTTCCAGAAGCCAGTTTGAAGTTTGCTTACGAGAGTCAAGGACATTTGATGGAGGTCATAGTAATCTTGTGGTGAACTGGATGGCATACGAGAATTTCCCTTCGTCGTGGGAAGCTAAAGAGTCTTCCAAGGTCCAGTTTTCTGAAAACGAGATACCAACTGCTGGAAACAATCACGCCCTGTGTAAGAAAATGAATTTTACCAAGCCATTTTACACGCCACCAGTGGTGCTTACAACTGTCATCAATGAAGGTAACAACAACTCCAACAGTGTGTGCGCAGTCAAAGGTCCTTTAAGCAGTTGGCTGGAGGAGGTAACAAAGACCCACTTTCGAGTTTGCATCAAAGACTACGCAGGATATGATGGTCAGAGAAGCAATGTAGCTGTAGACTTCTTGGTTGTCGGAGATCTCGACCCATGTGACAATTCAAGCTGCAAGTACTACAGTCATTGCAAAGCCTCGTCACCACAACAGTTCGCTTGCGTTTGTGAAAGCAGCTGCCCATCATACGAAGAACAAGTCTGCGCTTCTAACGGTCGCACTTTCAACAATCTGTGCTTACTGAAGAAAGAAATCTGTGAAACACAAGGAAACTATACCCAGTATCATCCTGGAAGCTGCGCAGGTTTCCCACTCCAAAAAGGAAGACACAAGTTTCAAAACCTTCCATCCTGGGCAGAGGACCAGTGTGAAACCATCCAATTTGAGCCGTTTATATTTTACCCACATCAGAAAATCTACATCCAGCTCACTGTGAACCACGTCAACTACTCAGATGCAGCATTCGTACACGAGGCCACTACACCTTGGGTTGAAAGCGTCAACAGCACTCAGTTTACCGCCTGTGTTACTCGAGCAGGAAGGAATGACTACCCCGCGGATAGTTTTGCTACAGTTGATTGGGTCGCCTACCAAGGTGCTCCCCCTGGGGGAGTGGTGGGTGAGGAAAAGTTTTCTCGATGGTGGACTGGAACTAGTTGTCAGACGGTCTCCTTACCAAACgGAAAGTATTCTACGTCACCGACCATATTCGCAACTGCAGAGCATCATAGATCCCATCTGAGACATGATTCTGCCACTGTATGGCTTGAAGATGTGTCGGCGAGATCCTTCAAGATTTGCATCCGGGAGCTTCAAAACTTCGCAGGAGTTCATGACGACATCTCTGTGAACTGGTTGGCGTTCAAGACTCTTCACAGACCGCTATTCTCAGAACATAATGATATCAGCTTTCAAAACAGAAATTTACCCTCCAAGAGCAATAACTTCGCGTTCTGCAAgGATATTAGTTTCATTCGAAGCTACAACAAATACCCAACAGTGCTATTAACACCCAAACATTTTAGCAGTGGAGGAAATGCGGCCCCAGAGTGCAACGGAATCGTGAGCTGGATTGAGTTCATCAACAACTCTGGATTTAGAATTTGCGTCAAAGAACTGTTTGTTCAGCGCTTTGATCCACTGACTGTGTCATATGCAGTATTAACAGACATATGTTCCGATCACTGGACCTACTTTAAAGGATACTGCTACAGAAAAGTATCTTCATGTGATTCATGGAGTGGCAGCCAGGGAAAGTGTTCAACATTGGGAGCCAATCTTCCCAGTATCCACAGCCAAGAGGAAAATGTCTACGTTCAACATTTACATGGCGGAGAACATTCTTGGTTGGGCCTTTCTGATATTAACACTGAAGGAACGTTTGTCTGGAGCGATGGGACGCCTTTTGACTTTTATTACTGGGCGAAGAACCAACCGAACAATTTAAACAATGAAGATTGTGTCCACACCCTTGGATTACTTCGTGATCACGAGTACAAATGGAATGACGTGAATTGTTCAGACTGTCACAGGTTCACTTGCATGAAAGGTACTTTGTTGAACCCTTGTCATATTGTTCAAGGCCTTGAATTGACAATAGATGGTAACGCTAGACAAGAGCGTTTGCTCCCCATTAGCAACAGTGAATATGGCTGTCAGAAAATCTGA

Transcript

BRAKERRLHT00000038912

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20693	Low affinity immunoglobulin epsilon Fc receptor OS=Mus musculus OX=10090 GN=Fcer2 PE=1 SV=1
Q8HY02	CD209 antigen OS=Symphalangus syndactylus OX=9590 GN=CD209 PE=3 SV=1
Q8HY06	C-type lectin domain family 4 member M OS=Gorilla gorilla gorilla OX=9595 GN=CLEC4M PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF09458 all species →	H_lectin	H-type lectin domain	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR019019 all species →	Domain	H-type lectin domain	Interproscan
IPR050801 all species →	Family	Calcium-Dependent Lectins in Immunity and Development	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22801 all species →	LITHOSTATHINE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERRLHP00000038912.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.