Gene detail

Detailed information of BRAKERRLHP00000044729.1 in Dendrophyllia cribrosa

Genomic Location: not available for this species
NR annotation: CAH3036483.1, unnamed protein product, partial [Porites lobata]
Species Dendrophyllia cribrosa · all data for this species · gene families

Sequence

CDS

BRAKERRLHT00000044729

atgggTTGTGGTGGACAAGACGAGTCGGCAGGAAAGTCTGAGGGCTGGAAACACTCTGGATCAGAAAatgggcagcgttGTTGCTTATCAACTGTGGGAAACGAAAGAGGTGTTACCCGGGATTTGGGAATTGTTGCATCTTCACAACTTGATGGTACTCACACATCTTCCTACAGTCGCCTCTATGGGGTCACGTCATGGTGCAGCAAGTTATCAGGGCCCCCTCCACACTACCTGGAGTTCGATTTAAGAAGCATAATTACAGTCACCGGTTTGGCTACTCAGGGTGACGCTGTAAATGACAAATGGGTGACAAGCTATACTATAAGCTATGGATATGATAGGCAAAGATGGATCAGTTACGCTGCTGGACAGCAACTGACTGGAAACAGCGACAAAAGTACAGTTGTTGTCAACTGGCTTTCGGAACCGTTTGCAGCTCAGTATGTCAAGATATTTCCAACTTCGTATAACAATGGAATATGCATGCGAATGGACTTGTTTATCTGTAAAGATTTTCAAGTCCCCTACATCTTGGCCGATCAACTTAAAGATGTTCAACTGACTGCTAACCCAAGTGCATCTGTCACACTCAACTGTACTGCCACTTTTAGTTCGCCACGACCCCCAGTCTACGAATGGAGAAAAAATGCCAATGTGTTGCCTGGATCATATTCATTTCTTACAATAACGTATAAAAGTGCAACTGACACCCACAAGAACAATTATTGTGCAAGAATGGCTCCATCAGCCCGTGAAGTCCAATGCAACTCAACATACCAATGTACTCGATCACTTCCTGGATTGGCAGACACAGATGTGACGAAAGCGAATGTCACTGTTGTTTTAAAGGTACCAGGCCCACCAACTGTTAATTCTGGTAACATCAAAGCAAGATCAACATCAGTCACATGGTCTTATTCCCCAGGAATTGATGAACTGTCTGTAGATGAATATACTCTCCAGTATCAAAATCGCTCTTTCAATGATAATATCACCTTGTCAGGTGGCTTATCAAGTAAGGATTTGATTAATCTCAAACCATATACATCCTACAGTGTTAGAATGATGGCCAAGAGTGCGTTGGGAGAAGGCTTGTGGAGTGGTCTCgtaaacttcaaaacaaaaactgcagTTCCAGAGGATGCTCCATATCTTACAAATGTGACAGCTTTATCTTCGCAAACTATTTACATTGAATGGCAGGGGCCAAGTCCTGACAAAGTAAACGGACCCATTCACCAATATAAAGTTTCTTATAAAGAAGCAGGGGTTAATGCCAGATTTGTTTCCCTCTCTGGATCGTCGACCAGCTACACGTTGGTAAACCTGAAGAAATGGACAGATTATATATTTCAAATTAAAGTAAACAATGGCGACTTTGATGGTCCTTGGAGTGCTGAAAGACGAGCTCGGACAAAACAAGATGCCCCGAGCTCACCAAAAAACCTCCACTTAAAAGTAAAAGGTCCAAATGGAAATTCCAGACCACAACTGACTGTCACGTGGATGAAACCAGACACTGCGAATGGAATTATTACAATGTACAAACTGCTCTACTCCTTTACTCTTGAAGGAAAATCAACTTCTCATCAACACAACATAAGTCATAGTGTGTTCAGCTTTAATTTCAACGTTCTTGGTGGAATACAGTACGCAGTTCGACTCTGGGCTGAAACTGTTAAACCAGGACAAGAGGCAATTGAATCCACGCTAGTTCCAACTTATAAGCCAAGTATTCCACCTCAAGAAATTAAATCACAGATGATCCACCAGACGATATACAACATAACCTGGCAGCCTCTCTCAAGGGAGAAAAGCAACGGAGAAATAACTACTTACGAAGTTCAGTCCTCTGCATTTCCAAAACAATGCACAAGAGCGGCAGTTAATAATTTGCTTGTTAAATTAAACAACGTCACCCAAACAACACACAATTTTGTTCTCTCTGATTTACGACCGTGTACCGAGTATGAAATCAAGGTGCGAGCGTATACTGTCGCTGGTCCAAGTGAGTTTGGTAGCCTTCCCATTCCAATTGACACCTCAGTTCCATTAGTGCCAACTGGTTTATCATCTGCCTCGTCACCACAATCAACCAGTTTAACCCTTAACTGGAAAAAGCCTTCAATGAATAGTGAATTGGTGGAAACATATCAGATCTTATTCAACGGAACAAAAAGCTATTTCAAGGACTTTAAAGACGCGCGAGTAATTGACACATCTGGCCCCGTTCTGTCGTATAAAGTGGATACTCTGTTACCTGGAACAGAGTATACATTTGCCGTAAGGGCAAAGAGTACATGTGGAATAGGAGACGTTGGAAACGGAGTAGTTGTGGAAACCATTGTGGATTATCCCAGAAGTCCTAATGTCTCCGTCGTCGAGAAAATAAGTACGCCAAATACGTCCCTTTCAGTCACTATATGGGGTGTTGAACCTTACAATGGACCAATAAGTCACTACCAAGTCATTGTCCAAAGTGCAAATAACTGGGCAGATGAAATACCAGAAAAGAACAAACAGAAACTGTTGAATTATGACGAATCTCAAGAAGAGAAACAAGGTTTCTACATTGCCGCTGAGTTGCAGTCCGAGTTAATTCTTTCTTCTCTAACGTTTGATGTCGGTGATGGAAAATACTATGGTGGTTACAAAAATGTTGCTTTGGCCAAATCACACAAATACAAGATTTACATAAGAGCAGTAACTACAACCCCCGAGGTAATGTTTAAGCAACTGGTATTGGATTATCATGAGCAAATTCCATGTGCACATTCAAACTGCGCTAGCCAATGTTACATACATTGTTGA

Transcript

BRAKERRLHT00000044729

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2A8L5	Receptor-type tyrosine-protein phosphatase F OS=Mus musculus OX=10090 GN=Ptprf PE=1 SV=1
A7MBJ4	Receptor-type tyrosine-protein phosphatase F OS=Bos taurus OX=9913 GN=PTPRF PE=2 SV=1
Q64604	Receptor-type tyrosine-protein phosphatase F OS=Rattus norvegicus OX=10116 GN=Ptprf PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000057 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF18861 all species →	PTP_tm	TM proximal of protein tyrosine phosphatase, receptor type J	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR051622 all species →	Family	Receptor-type Tyrosine-protein Phosphatases	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR041201 all species →	Domain	PTPRJ, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24051 all species →	SUSHI DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERRLHP00000044729.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.