Gene detail

Detailed information of BRAKERRLHP00000046853.1 in Dendrophyllia cribrosa

Genomic Location: :...
NR annotation: CAH3111286.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERRLHT00000046853

ATGGACAGCACCACAACTCAAAAGTACTGGGTTGATGTTCAGCTACGCTGGGGAGACTACGACTCACATGACATCGAGAGATACGCACGTGCAAAATACGTTGACTACACCACTGATAACATGAGTATCTACCCCTCCCCCACTGGGGTGCTCATTGGTATTGACTTGGCTTACAATCTTCACAGTGCCTTTGGCAACTGGTTCCCTGGTGTGAAACCCCTCATCCAGCAGGCCATGGCTAAGATCATGAAGGCGAACCCCGCCCTGTACGTGCTGAGAGAGCGAATCAGGAAAGGTCTCCAGCTATACTCCAGTGAACCCACTGAGCCTTACCTTTCCTCACAGAACTACGGAGAGTTGTTCTCAAACCAGATCATCTGGTTTGTGGACGACACCAATGTCTACAGAGTCACCATTCACAAGACATTTGAAGGTAACTTGACCACGAAGCCAATCAATGGCGCCATCTTCATCTTCAATCCTCGCACGGGACAACTTTTCCTCAAAATCATTCACACTTCTGTGTGGGCAGGACAGAAACGTTTGGGACAGTTGGCCAAATGGAGGACAGCTGAAGAAGTAGCAGCCTTGATTCGTTCACTGCCAGTTGAAGAACAGCCCAAACAGATCATTGTGACAAGAAAAGGAATGCTTGACCCTCTGGAGGTCCATCTGTTGGATTTCCCTAACATTGTCATCAAGGGAAGTGAACTTCAGCTTCCTTTCCAGGCCTGCTTAAAGGTAGAAAAGCTTGGAGACATGATCTTGAAAGCAACTGAGCCACAGATGGTCCTGTTCAACCTGTACGATGATTGGTTAAAGACAATCTCTTCATACACGGCCTTCTCTCGTCTGATCCTCATCCTGCGAGCCTTGCACGTGAATGCTGACCGAACCAAGGTTATCCTCAAACCAGACAAGACAACCATCACTGAACCACATCACATCTGGCCCACCCTGACAGATGAGGAATGGGTACCAGTTGAGGTTGCTCTGAAAGATCTCATCCTGGCCGATTATGGCAAGAAGAACAATGTGAACGTAGCTTCCTTGACCCAGTCTGAGATCCGAGACATCATTCTGGGTATGGAGATCTCAGCACCCTCGCAACAGAGGCAGCAGATTGCCGAGATCGAGAAGCAGACCAAGGAACAGTCGCAGCTGACAGCTACCACCACCCGTACCACCAACATCCACGGCGATGAGATCATCGTGTCTACTACATCCAACTATGAGACGCAGACATTCTCATCCAAGACAGAGTGGCGAGTGAGGGCGATATCCGCCACTAATCTGCACTTGAGAACTAATCACATCTATGTGTCTTCTGATGACATCAAGGAGACTGGCTTCACGTATATTCTGCCCAAGAACATCCTGAAGAAGTTTATCGTTATCTCAGATTCGAGAACACAGATCGCAGGTTACCTGTATGGTGTCAGTCCACCTGATAATCCTCAAGTGAAGGAGATTCGCTGTATTGTGCTGGTGCCACAGTGGGGTACCCACCAAACTGTTCACTTACCCAACATGTTACCACAACACGACTACCTCAAGGAAATGGAACCATTAGGTTGGGTTCACACTCAGCCCAATGAACTGCCTCAGCTTTCACCACAAGACGTCACAACACACGCCAAGATTATGGCGGACAATCCGTCATGGGATGGCGAGAAAACTGTCATCATCACGTGCAGTTTTACTCCTGGCTCGTGTTCACTGACAGCCTACAAGCTGACCCCCTCGGGTTACGACTGGGGGCGGAACAACAAGGACACCGGGAACAATCCCAGGGGTTACCTCCCCTCTCACTACGAAAAAGTTCAGATGTTACTGTCTAATCGATTCCTTGGTTTCTTCATGGTTCCCGCCCAAGGATCATGGAACTTCAACTTCATGGGTGTTCGTCACTCTCCTAACATGCGTTACGAGCTGCAGCTGTCCAATCCTAAAGAATTCTACCATGAGGTTCACCGCCCCTCGCACTTCCTTAACTTCAGCACCATGGAAGATGTGGAAGTTATCGGCGCTGATAGAGATGACATGTTCTCATAA

Transcript

BRAKERRLHT00000046853

Protein

Uniprot

Gene family

Uniprot term	Description
Q6P2Q9	Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens OX=9606 GN=PRPF8 PE=1 SV=2
Q99PV0	Pre-mRNA-processing-splicing factor 8 OS=Mus musculus OX=10090 GN=Prpf8 PE=1 SV=2
P34369	Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans OX=6239 GN=prp-8 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Jab_MPN

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01398	JAB	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	Family	Interproscan
PF12134	PRP8_domainIV	PRP8 domain IV core	Domain	Interproscan
PF08084	PROCT	PROCT (NUC072) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043172	Homologous_superfamily	Prp8 RNase domain IV, palm region	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR000555	Domain	JAB1/MPN/MOV34 metalloenzyme domain	Interproscan
IPR021983	Domain	PRP8 domain IV core	Interproscan
IPR043173	Homologous_superfamily	Prp8 RNase domain IV, fingers region	Interproscan
IPR012984	Domain	PROCT domain	Interproscan
IPR037518	Domain	MPN domain	Interproscan
IPR027652	Family	Pre-mRNA-processing-splicing factor 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11140	PRE-MRNA SPLICING FACTOR PRP8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008233	Molecular Function	peptidase activity	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0000244	Biological Process	spliceosomal tri-snRNP complex assembly	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0005682	Cellular Component	U5 snRNP	Interproscan
GO:0017070	Molecular Function	U6 snRNA binding	Interproscan
GO:0030619	Molecular Function	U1 snRNA binding	Interproscan
GO:0030620	Molecular Function	U2 snRNA binding	Interproscan
GO:0030623	Molecular Function	U5 snRNA binding	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0097157	Molecular Function	pre-mRNA intronic binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15524	mngB; 2-O-(6-phospho-alpha-D-mannosyl)-D-glycerate hydrolase	EC:3.2.1.-	Enzymes with EC numbers	-	deepkoala