Gene detail

Detailed information of BRAKERRLHP00000046965.1 in Dendrophyllia cribrosa

Genomic Location: not available for this species
NR annotation: WP_073182592.1, DNA polymerase III subunit alpha [Tenacibaculum mesophilum]
Species Dendrophyllia cribrosa · all data for this species · gene families

Sequence

CDS

BRAKERRLHT00000046965

ATGCCTGCAGTCGCTTTGACTGATAAGGCCAATATGATGGGGACATTTATATTCGTAGAATCTATAAGCAATTATAATAAAAAGCATCGCACAAATATAAAAGCCATTGTAGGCTGTGAGTTGAATGTATGCAaaaatcatattgataaaagtaAAAAAGACAATGGATATCGAATTGTGATGCttgctaaaaataaaaatgggtATCATAATTTAGTTAAAATGAACTCTATTGCCTATACGCAAGGATTTTATTATGTACCGCGTGTTGATAAACAGATTGTTGAGCAGTACAAGCAAGATATTATCGTTTTGACAGGAAGTACTTATGGTGAGGTACCCAGTAAAATTTTATCTGTTGGAGATAAACAAGCAGAAGAAGCTTTGCTTTGGTGGCATAGGCAGTTTGGAGAAAATTTGTATATAGAACTGATGCGTCATAATCGAGAAGATGAAGATAAAATCAATACCACGTTGTTATCCTTTGCTGAAAAACATCAGATTAAAACTGTTGCAACGAATCACACTTTTTATTTAGAACCGCAACAAGCCAATGCTCACGATGTATTGCTTTGTGTGAGAGATGGTGAAAAGCAACAAACCCCCAAAGGAAGAGGGAGGGGGCACCGTTATGGATTGCCTAATGAAGAATACTATTTTAAATCTCCTGAGCAGATGAAAGCTCTGTTTGTAGACATTCCACAAGCAATTTTGAATATACAAGAGATCGTTGATAAAATAGAACCTTTTGAATTGATAAGAAAAGTTTTATTACCTGTATTTGATATTCCTAGAAGGTTTCAGATAGAAAATGATACAGATAAAATAGGagagaataattatttaaaatttcTTGCCTATCAAGGGGCGAGAGAACGTTATGGAGAAATTACTGATCAGATGAAACAACGTTTGGAATTTGAATTAGGAGTTATTAAAAATACAGGTTATCCCGGATACTTTTTAATTGTAGAGGATTTTATTAGAAAAGCAAGAGAAATGCATGTTTCAGTAGGTCCTGGAAGAGGCTCGGTAGCGGGTTCCGTTGTAGCATATTGTTTGAAGATTACTAATATAGATCctgttaaatataatttgctttttgagcgttttttgAATCCTGAAAGGATTTCTATGCCTGATATTGATATAGATTTTGACGATGAAGGCAGGCAAAAAGTTATTGATTATGTAATTGAAAAATATGGAGATAATCAAGTGGCCCAAATTATTACTTATGGTTCTATGGCTGCAAAATCTGCTATTAGAGATACAGCTAGAGTTCTGGATTTACCTTTGTTTGATGCCGATAAGATTGCTAAGTTAATACCTCCTATGATGAGCCTTgctgaaatattttctttaaacaGAAAAGCGTTGGAAGAAAAGTTACGTAAAGAAGAGTTAGAGAATATAGAGCAGTTAAAAGTATTGTCTAACAAAAACGATGAGGTAGCTAAAACTATCAATCAAGCTCGGATTTTAGAAGGTTCTATAAGAAATACTGGAACACATGCATGTGGTGTGATCATTACTCCTGGTGATATTACTGATTTTGTGCCGGTTACCATTGCAAAAGATTCTAATATACGAGTAACGCAGTTTGATAATAATGTTGTAGAGCGCGCGGGGCTTTTAAAGATGGATTTTTTAGGACTGAAAACTTTGACAATTATTAAGGAAGCAGTAACTCTTGTAAAACGAAGATATAATATAGATTTAAATCCCGATGAATTTTCTTTAGAGGATACCAAAACCTATGAACTTTTTCAAAGGGGAGAAACTAAAGCTATTTTTCAGTATGAATCCGATGGTATGCAAAAATATATGAAGGATTTAAAACCCACGGTATTTGCTGATTTAATTGCTATGAATGCGTTGTATCGTCCAGGACCTTTGGAGTATATTCCAAGTTTTATTAGAAGAAAACACGGGAAAGAACCTATTGAATATGATTTGCCAGAAATGGAATCGTATTTAGCAGAAACTTATGGAATCACTGTATATCAAGAGCAAGTAATGTTACTTTCTCAGAAATTGGCAAACTTTACTAAAGGTCAAGCAGATATTTTGCGTAAAGCTATGGGAAAAAAGCAAGCTGTAGTACTCGCCAAAATGAAATCTGAATTTATAAAAGGAGCCATATCTAATGGTCATAATGATAAGAAATTAGAAAAAATTTGGAAGGATTGGGAAGCTTTTGCTTCGTATGCTTTTAATAAATCACATTCTACTTGTTATGCATATGTAGGTTACCAAACGGCTTATTTAAAAGCGCATTATCCAGCAGAATATATGGCAGCAGTTTTATCAAATAATATGGATGATATTGATAAAGTATCCACTTTTATGCAAGAATGCAAACAGATATCTATTAATGTTTTAGGACCTGATATCAATGAATCTTATGCTCAATTTTCAGTAAGTAAACAAACAGGGGCAATACGTTTTGGTATGGTTGCTATTAAAGGAGTAGGAATATCCGTTGTGGACAGCATTATAAAGGAGAGAGAAAATGGGGATTTTACCTCTGTATTTGATATGGTCAAACGTTTAGATTTGAATAAACTCAATAAAAAAGTTTTGCAAGGTTTAGTGCTTTCTGGTGCATTAGATGGGTTTAAAGATATAAACCGAGCTCAATATTATGAAAAAGATGATAAGGATGTTCTGATATCATCTCTGCTGAACGTCCTTCAATGTGATGGCGCTCTAACATATGTACTAGTTCTCCATCTTTAA

Transcript

BRAKERRLHT00000046965

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O51526	DNA polymerase III subunit alpha OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=dnaE PE=3 SV=2
O67125	DNA polymerase III subunit alpha OS=Aquifex aeolicus (strain VF5) OX=224324 GN=dnaE PE=3 SV=1
Q9PPI9	DNA polymerase III subunit alpha OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168) OX=192222 GN=dnaE PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011882 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02811 all species →	PHP	PHP domain	Family	Interproscan
PF17657 all species →	DNA_pol3_finger	Bacterial DNA polymerase III alpha subunit finger domain	Domain	Interproscan
PF14579 all species →	HHH_6	Helix-hairpin-helix motif	Domain	Interproscan
PF07733 all species →	DNA_pol3_alpha	Bacterial DNA polymerase III alpha NTPase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004013 all species →	Domain	PHP domain	Interproscan
IPR004805 all species →	Family	Error-prone DNA polymerase/DNA polymerase III subunit alpha DnaE/PolC	Interproscan
IPR040982 all species →	Domain	DNA polymerase III alpha subunit finger domain	Interproscan
IPR029460 all species →	Domain	DNA polymerase, helix-hairpin-helix motif	Interproscan
IPR041931 all species →	Homologous_superfamily	Bacterial DNA polymerase III alpha subunit, thumb domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR011708 all species →	Domain	Bacterial DNA polymerase III, alpha subunit, NTPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32294 all species →	DNA POLYMERASE III SUBUNIT ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02337	dnaE; DNA polymerase III subunit alpha	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.