Gene detail

Detailed information of BRAKERTYJP00000000061.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000000061

ATGGCGGCCGCGACGATAAAGTTTCGCTGCGAGCGGTTGTTCTGGTTTCTGCGCCTTTTCAACGAATCTGGACGCTCTCTGTCACACGTAATTACAACGGAAAGCAAATTTAGTACCAGCACATGTAATTTATATTGTAAAACGCTTCCACTGTTGGCGAAAAAGTGGAATACCGTGGAAACGACACATCGTGATTTTGCAAAACCGAATTCATTTGGTCGTGGCGATCTCCCAACAAGGTCACAATCAAAGAACACAGATTTCAACAGAGATAAAGAAGACTTCGATTCAGATAgtggagaagaagaagaagaaattttGGACAGCAAATCTCACAAACTGAAGAAGAAATCTGGTCAGTCTGCAAAATGGCAGCTAAGACAAAAATCTGCAAAGACGACTATTTTACGGCCTTCAAAATATATGTTTAGAGATCGTAAAGACTGGAATGAAGAACAGCAGTGGGAAGGAAGAGAAATTCCTGAAGACtttaaaaggaaagcgggttggtACACAAGACAAATGTCAAGGTTCAGTCATGAAGGCCAGGTTGACAAAGCCCTGGAACTCTTGTCATCcatgaaagaagagaaaattCCTCTTACAGTGGAGATTTTCAACATCATTATTTCTGGATATGCTAGATGTGGAAAAGTGAGAAAAGCTTTTAAATTCTACAATGATGTTAAAAAGAGAGGATTGAAACCAACACCGCACACATACACAAGTTTGTTCAATGCCTGCACCACATCTCCAGTGCCTATGCGTGCCTTAGAGCTCGCTGAAAAGCTCCTTGCTGAAATCAACACAAGAATCAGCAAAAAAGATCTGGAAATGAATGTGATCACTTACAATGCTGCCATCCAAGCTGTCACTGTCTGTGGGGATCATCTTCGAGCATTTGAAATCTACAGAGAAATGCAATACAACAATATTAAGCCAGACGGCCACACCTTTTCGTCATTACTGACCGCCTGCTCATTTGATAAAGTTGATGGACCCAGCACGGCACTAAAAATGATTGAAGAGATGAAGAGCCTCAAAATAAAGCCAGATATCTACATTTTTAACTCTGTATTAAAAGTTATGAGAGATTTTAAGGTTTTTAACCAAAAGCAAAACATAGAGTTGCCTCAGGCTGCATGGAGTTCAGGGAAAACAGTAATTCAGACAGTAAAAAGAATTGATGGTAAAGGAGATCCTAAACATGGGCATATGCATGTAAAAATATCAGAAGATAATGCCACAAATCAAAATGCCTCACACAGTCCTCAAGAAGACAAAAAGAACAGTGGAAAACAAAATGACGAAGATCTCAAATTACACAATCATTTTCCTGGCGTAGAGAAGTTTATTCACATGATGGCCATTGAAGATGTGTATCCTGATGTACGAACCTTTCAGCTGCTTCTCCACATGACATCATCAAAAGCAGAAGAAGAATACTTGATAGAACTTATGAAGAGCTGTGACATTTCTCCCGATGTtactttttataatactttgGTAAAGAGGAATGCATTGGAGGGGGATTTACAGAAGGCAAAGGAACACATGAAGAAGCTTGAAGAAACATTGAAGATTTCTCCATCAGAAAAATCCTATCAGACACTGGCTCGTGGCTGCACAAACCAAGAAGACAGAATGGCTTTATTGGATGATATCCAATCTAAGGGAATTACCCCAGCCCAGTCTGTGTATGGAACATTGATTGCGGGAGCAGCTAAACAGAAACAATTCAGCTCCCTTATCCAGCTTGTCAAGAGGATGACATGTGATGATGTGCCGCCCAATGATAGAATAATGGCTGTGCTTGAACGAACTTACAAATTGCCCTGCAGTAAACCTTTCATTAAGgaaAACACCCCTCATCGTTTAGTAAAAGACAAAAGATTTCAATATGTAGAACAGAAAGGTTTCCAGTCGTTCTTCGAAAACTGGAAAGAGAAAATCTTGAATAATAAAACCACAATGAAAGATGAGGAATATCACGATGAACATGAGGAACATGATGATGACGTCAGTGATGACGAAGAGTCTAAATTTAGTCACCTCTGA

Transcript

BRAKERTYJT00000000061

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13041 all species →	PPR_2	PPR repeat family	Repeat	Interproscan
PF01535 all species →	PPR	PPR repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47936 all species →	PPR_LONG DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0009507 all species →	Cellular Component	chloroplast	Interproscan
GO:0010019 all species →	Biological Process	chloroplast-nucleus signaling pathway	Interproscan
GO:0031930 all species →	Biological Process	mitochondria-nucleus signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17710	PTCD1; pentatricopeptide repeat domain-containing protein 1	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.