Gene detail

Detailed information of BRAKERTYJP00000001983.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000001983

atgagaacagatcccccaatgctgtacagagaagttCTTTTTACCCATCCAGCTGTGCACAgtgaaatgaatcgcaaatggAATGGTCGCGAATTTATGAAGTCAAAATGGAAATCTTGGCAGCTAAATTTTTTCATTATCTGGTGTCTTTTTGACCTTGTGTTTTCTCCAATTCTGCTTGCTGTGTTTTCTCCACTGAGGAACAAAGGGAAAGAAGGGAACCAAACGGTAGCACAGTTATATCTGTGTTACCTGGAATCTCCTTACTACAAGTTTGTTCGCGATACGCTGAGCTACATAATCCTGCTTTTCCTACACTATGCACTGTGCCTATCACCATCAACCATTGCATTCAGTGGATTGGAGTGGTCCATCCTTGTCTTCTTCATTGGCCGCTGTCTGGTGGAGTTGAAGCAAATTTGGGGCATTAAGCAATGGTTAAACCGATCAAGAGAAATTGAAAACGATGGAGCTCTATCACGCTGCTTTAAAACATTTTCACTATACATCAGCGACTGTTGGAACAAGATAGACTTGGTCAGTCTGGTAATCTACCTTATAATACTGATGTTGAGAATTGTCACGTGGGTCATGGCTGGATCAGTGACGAACAACCGAGCGCTTGTCATCGCTAGTTATCTCTACAGCTTTAATACATTGTGCCTTACCGTTCGAGCTTTTGGTCACGTGATGGAACAATTGAAAGAGGTTGGCACCATCCAGATCGCCCTATTCAGCATTCTCAAAGACGTTCGCACAGTATTTTGGCAGTTTATGGCGGTAATTGTGGCCTTCTCCTTCGCCATATCAAAGATTTACATATCCGAGAAATCGTTCATTGCAAATGGGAGTGATAGACATGAAATTTGGTGGGTGATGGTCTCTCACCTGGGCTGGTCCCTGCTAGGTGAATCAGAAGAATCTGACCCAATGGCGTCTGTTGATCTTCCTTCGGTAACACTGGCCAGAATCTTCTACGCTGTTTTCCTCATTTTTGGAGTCATCCTTCTCATTAATATGCTGATAGCCTTACTGTCCAATACGTATCAGAAAACGGAGAACAACTCGATAAGGGAGTGGTCATTCAAAAGGGCGGTGACGATTCAGACGTACGATGGATATGATCCAATCCCAGTGCCCCTTAATATCATCTACAGAATATTCATCACCCTACTGCGGCTGTGCAAGAAGACAGATGCAACGAAGTTGTCAGGTTTGGAAGAGCATGTAGAAACCCTTGAAGAGAAATACTTCGCAGAGCATGCAAATATGTTCCCTGTAACAGATGAAATGAAAGTCGATTTGGTGCTTCGAGAGACAGAGAGAAACCGACAAATGATGAGTCAAATTCTTAGCACAACATTTGCATCCAAGGGAGGTGATCGAGGAACACTATGTCCTGGTCAAAAGGTCACCGTTATAGAAACTGGGAAGACAAAGTGGCTGGGAATAGGTATAGTGACTGAAGAATACAACACCAGTAAAATGCCAGGATGGAAAAAAGAATCTGTTGGATACCATACTGATGATGGAAACATCTTTCACAATGACGATGATCCTGATTCTGCCATAAAAACTGAGGGCCCTGCTATGGCTCGCCGAGGTGATCGCATTCGCTGTACAGTTATGTTTGAGAAAAGGCAAGTGAGAGACGGTGGCAAAGATCAAGTTCCAGTTTTCTTTACTCTGAATGGCAAGAAGATAATTATCCAACGTGAAGAGAGTACAGCTGAAAGTAAAGATATTTTCATAGATTGTGATGCGCTATTCCCCTTCATTTGCATGACGGAAGGTAGTAGTGTGTTGGCCAAGATGTGTGCGAAAGAGGATGGGGATCTTGCTGATGTTGCACCTTCAGAGAGAGGAGCATTAAAGGAGAACAGCCCACAGCTGGAAGAGATAAAAGCTGATCTTGTTGATGTTGGTAACCACCTGATACGCGCTAGAGAGGATGTAGTTCGTCAGAGTTCGGATATTCAAGACGTGAAATCCGACCTTGCTGCTGTTCGCGAGGACATAAAGCGGGATGTCCTTAAACAAAGCTTACAATTACAAGAGAACTTAGAGGATATTGTCAGCGAGGAAGTTAAAAAAGCGACAAGATGCTTGGAGAAAAAACTCGATGCTTTGTTGGCGAAGCTGGGTGAAAAGGAATAA

Transcript

BRAKERTYJT00000001983

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002153 all species →	Family	Transient receptor potential channel, canonical	Interproscan
IPR044736 all species →	Domain	Ran-binding protein Vid30/RanBPM/SPLA, SPRY domain	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR003877 all species →	Domain	SPRY domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10117 all species →	TRANSIENT RECEPTOR POTENTIAL CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005262 all species →	Molecular Function	calcium channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015279 all species →	Molecular Function	store-operated calcium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0034703 all species →	Cellular Component	cation channel complex	Interproscan
GO:0051480 all species →	Biological Process	regulation of cytosolic calcium ion concentration	Interproscan
GO:0070588 all species →	Biological Process	calcium ion transmembrane transport	Interproscan
GO:0070679 all species →	Molecular Function	inositol 1,4,5 trisphosphate binding	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04950	CNGA3; cyclic nucleotide gated channel alpha 3	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.