Gene detail

Detailed information of BRAKERTYJP00000002016.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation CGRAC2 · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000002016

ATGGCGTCCTCTGCAGAGGTTGACGAAGTTTCCACGAGGTTAATTCAGGCGATTGAAACGGCGTTAAATCCTTCCACCGTACAACAGCAGAGAATTGAAGCTTATAAGTTCATTGAGGAGTTCAAGGCCAATTCCCCATTATGCATTCCTGTGGCACTTAAGCTGTATGATTGGCAAAATGCTGCTGTAATTCGTCACACAGGACTTCAGCTCTTGGAACATACCGTCAAATTTAACTGGAATGCAATGAGTCCAAATGAACAAGCAAAACTCAAGGGAATCGCTCTTCACCTTCTAGCACAGGGAAGTGGTAATTTGCCAGACGAGCCTGCCCACATCAAGGAACAATTATCGCGGGTCATTGTGGAAATAACTAAGAGAGAATGGCCACAGAAATGGGGATCACTGCTTTCAGACCTGAATGGCATTTGTGCATTAGGGGATGTTCAAACTGAAATAGTCCTTATGATCCTGCTACGGCTCGCAGAAGATGTGATTTCAATGGACAATCATCTGCAGTCTAACAGAAAGAAACAGATTACTCAGGAATTGAACACCCATGCTCAAGGATTGTTTTCCTTCTTCATTGAAACACTACAGATTAATACTGCCAAGTATAGAACTTTAAAGACTGCAGTTCACCTGCGTTTAGCAGAACAGACCCTTATGACACTTACAGGATATCTGGACTGGGTGAAGTTTGCAGTGTTATACACACAGAACTGTATCATTCTACAGATGCTGTGCTTATTACTAGAGGAAGACTCGCTCAAAATAAGGGCTGCTGATTGTCTTCTTCTTATTGTCAGCAGAAAGGGAAAATACAATGAAAGGACACCACTGTTAAAGCTATTCAGTGAGGATGCAATGAGCATTATGTTGTCTGCTGCCCAGAGATCAGTTACTGCAGAATTTGATGAAAGACAATATCTCTTCCTGAAAAGATTGTGCCAGGTTCTGGTGACTTTAGGGGAAGCACAACTCTTCTTTTTGTGGAATGCTAATTATCCAAATGAGAAACCTCCAAACTTCAGACAATATTTGGAAGCACTAATAGCATTTGCAAAGCATGAAAGCTTGACCATACCCCATTTGACAAATACGCTCTGGCTAACATTCCTGAGAAACCCTGTTATAGCCGAGGACAAAACATTTAGGTCAATATTTCCAGCACTTTTGGATGTAGCAAAAGCCAAGCTTTTTAAGGTCAATCATCCTGAAGATAGTGATTCACCTGGAAGTATTTTTAACAAAGAGGACTTCAACAGCGAGAGGGAATTCACTTCGGTTAATGGGCAGGTGAGAGGTGAAATCATGGACATAGTACGCCAAATAACCTTGGTGTATCCTGTTGAGACATTTGTATTTGGAGCTGACTGGTTGTTACAAAGAGCTGCTCAAACACCTGCACCAGATGTGAAAATCAGTGCACATGAGGCAGAACAAGCCAAGCAGGAGTGGGATGGACTTACTCGGTACATGGACGCAGTTATGTCCAGATTTTTTAAGGTGGAGAATCATGAGGAGATCATTCTGAGCCAGGTAACATTTCGTGGATCAACTGTAGGATTTATTGAATTGTCCAGGAAATGCATCGAGGCCATATTGGTAGTTGATTCAAAGGTGTCTGATGTCCTAGCAAGTGTAACAGATGCAATTCAAGCTCTTtatccttttctaaaatataaCAAAGATTTGATCATGGATGTCTTACGAAAGATGTTTACAGTGGTTCTGTTTAACACAAGTGAAGATCCTAAGGGTCCTTGGAGTCTTGATGTACTTCATGCTCGTCGACATGCATGTAGTGCTGTCAGTAAAGTCTGCAAAGAGTTTGGACAATTACTTGTGCCTGTATTTGACGCTCTTAAGCAACATGTACAGGCCTTGTTTGAGGGAGAGCTGGTTCCTGTCAAGGACAGATGCACATTAACAGAAGCGCTGGTTATTGCCAGCAATAAGCTGGGCAAAGTAAAACAAGATGCTTTCCTGAGTGAGCTGGTGATGCCCATCAGAGAAATATGGTTGAGTGACAGGATCCAAGGGGCCATCTCGTCTCCAGCAAGCTTTGTCTCATTTATGGGACTGGACCAAGACCCAGCCTTGTTATACCAGAATGATGAGCTGAAAAAAAGGAGATTTGAAGTCTTGTTATGCGTCACCACCATAATGGCAATTGTCCGAAGCTGTGCTTTAATCACTTTGAAGACGGCGACCAGAGAGGGGCTGTCCATTGGGTCGATGCCTAATGGGACTCCTTATGTGTGCAATCCTTGTGCACCCCATGTCGTGCCATTACTTGGCAATCTTGTGCTGTTAGCAAAGTGCGTGAACAGTCTGTACGATCCTACAGTGAAGGCTCTTATGTTTGGTGACTACCCAGCTATGCTAGACATGCACGACCTTGACACTAGTGCTATTTATGTGCTGTCTCAGGGACAAGAAAAAGACAGAAGTCAGACGCCCACTGTTTTTAAACCTATCCATGCTACAAAAACCTATTTCTATCACTTAGCAGATTCATGTATCCCTGGCTTGCCACAACTCATTGCAGAGAATGTGGTCAAATCTCTAACATATGTTCCCAACTACAGACTGAGGAAGCTAGACCAGTTAGAACATGACACTGGTTTAACCACACAAGAGCTGCGGTTTGTCATGTATcaTCTTGAAGAACAATGGCAAATAGTCGCACAACACCAAGCAGATAGCACGGCAGCTATAGATGAAGAGGATGACAACATAGAATCCAAGGAGATCATTGAAGACCAGCTGGTGTGCATCATCAGTAAAGACTACTTGGATGTTTTCACGTTAGCATGCGTAATGAACAAAGAGAGCAATGTGTCAACTGGAATGGAGGTCACAGAAGAGGATGAACTAAAAGgATTGGATCCGTACAATGCCAAATTGGGATCTTTAGGGATGCTTCTTCTGAGGACAGAGGTTGTAACAATATGCAAAGAAGCTGGCACTAGGTTAGCTGACTCTGTTGTAGAACAGTTGTTTTCTCAAGTCTTGAAGGGTCTTCATGTTCATGGCCAATGTTTTACAGAAACGTACCTGACTTTTACTGGACAGGCCATGTATGAACTACTGACTTTTGAGGCCATGTGTTTTGAAGGAAAAGAGGTTTCAGAGAAGAGAAAAAGAGAGCAATTCAAGAAACTTGTGTCTGGGATTGTAGGGAAAAACATTGCCGAGTTGTTCAAGAATGAGATCAAGATTAAAGACCTTCCTCCAATCAAGATAAATCGTGCCAAGCCCGAACCAAAGGAGGATCTTACAGGACTTACCGGGCTATTTGATCCAGAGAAGAGTTCAGAGGTAGCATAG

Transcript

BRAKERTYJT00000002016

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19273 all species →	Exportin-5	Exportin-5 family	Family	Interproscan
PF08389 all species →	Xpo1	Exportin 1-like protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045478 all species →	Domain	Exportin-5, C-terminal domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR045065 all species →	Family	Exportin-1/5	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013598 all species →	Domain	Exportin-1/Importin-beta-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11223 all species →	EXPORTIN 1/5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005049 all species →	Molecular Function	nuclear export signal receptor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0006611 all species →	Biological Process	protein export from nucleus	Interproscan
GO:0042565 all species →	Cellular Component	RNA nuclear export complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14289	XPO5; exportin-5	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.