Gene detail

Detailed information of BRAKERTYJP00000002271.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000002271

ATGCGTGTTTGTATTCGTGATGAAAGGAAAACAGGAGAACAGGATTGGTATGATGCAGGGTTTCAGCTGGATGATCCAGGCAAAGTTGTCTGTACAGATAACAAGAAGAGGAATCTGGATTACTTCTTGAGCTGCATGCAGAGTGCAGTGAGTGCTGTTGATCCTGAGACAGGAGGAGGAGAACTGATTGTCAGGATTCCAAATGAAGTCTTAGTTTGTGCAAATGAAGGTAAGCAGTTCCGTGTAAGCATTGAGTTTTCCTTGGAGCACCCTAAGGGAGGAATTCAGTTTGTTATTCCTAAAGGAGAAGGTACTATGGCTCAGCGGTCAGCACACTTGTTCAGCTATGGTTGTGCCAATTCTTCCAGATTGTGGTTTCCTTGTGTTGATTCCTATTCCGAGCTGTGTACATGGAACATTGACATCACTGTTGATATAGACATGATCGCTGTAAGCTGTGGAGATCTCATGGAGACGGTGATGACTGCTGATGAAAAGAGAAAAACCTATCACTATACTTTGAGCATTCCTACATCTGCTCCTAATATTGCATTGGCAGTTGGGCCATTTGAGATCCATGTGGACCCTGTCATGCCAGAAGTCACACACTTTTGTCTGCCTGGACTTCTTCCAGTTCTTAAAAACACCACAGCATTTCTTCACGAGGCATTTGAGTTTTATGAAGAATACCTCAGCTGCCGCTATCCTTATACCTACTACAAACAAGTGTTTGTTGATCAAGCTTATGACATCTTGTCGCCTTATGCCTCCATGACAATATTCAATACAAGTCTCCTTCACTCTTCAAGAATTATTGACCAGGGATTTGAAACCAGAAAATATTTATCCCAGGCTTTAGCAGAGCAGTTTTTTGGATGCTACCTTTGTATTCAAACATGGTCTGATTACTGGCTTGCCAGAGGAATTTCAGGATACATGTTTGGTTTATTTCTCAAAAAGATGTTTGGTAATAATGAATACAGGCACTGGATGAGAGAGGAGTCCAAACAAGTATGCCAGTATGAAATGCAAGGTCCTGGCATTCCTCCTCTACACAACTCAGGATCATTATCCATGACGACTGCAACAGGCTCCTCCTCAAGTCAGACACCAGAGTCCCCAACTCAGGGGAGTCCTCATTTGCACCCTCATTTAACATCGGGAAAGAACCTTGAAATTGTCTGGAGCAAGTCGCATCTTGTTATGAGAATGATTGAGATGCGCATAGGACAGGAACCTCTGTTGCAGGTGTTTAACAAGCTGTTATCACTTGCTAACAGTGCAGCGCAGCTCAAGGCAGACTACAGTCTCTGGACAAACCTACTTCTTTCCACCAGTGGGTTCCTCAAATCAATATCCACGGTTTCTGGCAAGGATATCAATGTGTTTGTTGATCAATGGATCTGTCATAGTGGTGTGGCCAAATTCCATGGAAGCTTTGTTTTTAATAGAAAGCGTAATATTGTTGAGCTTGAAATCAAGCAGGACATGTCACGAGGCACAGCAAAATATGTGggacCCCTAACAGTCTGTATACAGGAGTTGGATGGGTCATTCAACCATACTGTACAGATTGAAGATGTCTATAGCCGCCACGAACTGCCGTGTCATTCCAAGAGCCGTAGAAATAAGAAAAAGAAGATACCTCTTATGACAGGAGAAGAAGTTGACATGAATCTTGATGCAATGGACTCTGATTCACCAGTGTTGTGGGTTCGCATTGACCCTGAGGTCACGTGGCTTCGGCATGTCAGCTTTGAACAGCCTGACTACATGTGGCAGTATCAACTGAGGCACGAGAGAGATGTAATCGCTCAGAGTGAGGCTATTTCAGCACTGGAAAAATTTCCCTCACCAGCGACGAGGCAGGCTTTAATAGATGTCATCAACCAAAATGAGTGTTTTTACAGAGTTAGACAAGAAGCTTGCTTTTGTCTTGCTAAGGTCGCCACGGCTTGTGCGTCTAGCTGGACTGGCCATACAACGATGATCGGTATTTTCAGGAACATGTTTGGATCACAGTCGTGTCCACATATTGTCAAGTACAACGACTTTTCCAATTTCATCGCCTACTTCGTGCAAAAGACTCTGCCCGTTGCTATCGCCTCGGTAAGAAATGTCCATTCTCAGTGCCCTCGCGAAGTGCTTCAGTTCATATTGGATTTAATCAAATACAATGACAACAGGCTTAACAAGTACACCGACAGCCATTACCGGAGCGCACTTATTGACGCGCTGGCCGGAGAAGTGACCCGGCAGCTGAATTTAGAGAAGCTGCTTCCTACCTACAGATATGTAGTGTCTGTTAGTTGTCTGAAGGCGCTTAGAGTGTTACAAGTGAATAGTCACGTGCCTCCTGACCCCGCTGCTTTTGAATATTATGCCAGTTATGGTCATTTTGAAGATGTTCGTCTGGCAGCCATTGATTGCCTTGTGGATCTCACCAAAACTGAAAGCCTTGAAAGAGGACTGAATTACTTGATGGGATTAATTGAAAATGATCCTATTCCCTTTATCAGTTCCATTTCCTCTGTTGACGCTCGTCTCAGGCGAGATGGAGTTGAGTTATACAATGCATTATGGGGTCGTCTCACTCCTGGCTGTGTTCCTCCGCAGGGGATGGGTATCGTAATTGATTTGAAGGAGCGCAAGATTATGAGTCTTTCTCCTCTGCCACCACCTACCTCCCCGGGATCAATAAGCGGAGAAGAATCCACAACATCAAGGAAGAGCCACAAGAGAAAACATTCTCGAGGAGCGTCGCCTACAGACGTGAGTCATCTGGATTCTCAACCTGATACGCCCATGAGTGTTGAGTCAGCGAATTCTGAAGCCAGCAAACTCCGCGTCAAGATTAAGATTGGTGGTGAAGAGAGTGGCGCGGAAAGTACAGGCGAGACTCGAATAAAACCCGACCCGGACGGCGGCTCCCTCGAGCGCAAGAAAcacaagaagaagaaaaagaagaataaACACAAAGACGACCGGGAGAAAAGGAAACTGAGTACGAGTAGCAGTAATTATGACTCCCCGCTCATGTTCGACACCAGTCTTCCGTAG

Transcript

BRAKERTYJT00000002271

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01433 all species →	Peptidase_M1	Peptidase family M1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042097 all species →	Homologous_superfamily	Aminopeptidase N-like , N-terminal domain superfamliy	Interproscan
IPR037813 all species →	Family	Transcription initiation factor TFIID subunit 2	Interproscan
IPR027268 all species →	Homologous_superfamily	Peptidase M4/M1, CTD superfamily	Interproscan
IPR014782 all species →	Domain	Peptidase M1, membrane alanine aminopeptidase	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15137 all species →	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03128	TAF2; transcription initiation factor TFIID subunit 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.