Gene detail

Detailed information of BRAKERTYJP00000002525.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000002525

ATGTCGACGAGTTCAGCGACATATTTCAGTGAATCAAACAAGAAAGGAGAAGTTAGTGAACTGCAGAAGAGCTTACAATCTCCAGAGGTGCAGCGCGATGCTGTTCAGTACAAGAAAGTCATTCAAAAGGTGATAGCATGCATGACTTTGGGGATGGATTTGTCATCTTTGTTCATGGATATGATAAAGGCTGGAGCTACTCATGATCTTGTTCAAAAGAAGCTTGTGTACTTGTACATCTGTAGCTATGCCACATCCAATCCTGAACTGGCACTATTAACAGTGAACACAATGAGGAAAGACTGTCAAGACAGCAGTGCTATGGTCagaggtcttgccctgagaaGCATGTGCTCTTTGAGGCTTCCCGATCTTGTAGAATATATCACAGAGCCTCTCCTTGCTGGATTAAGTGATAACAGTTCTTATGTTCGCCGATCTGCTGTCATGGGCTGCGTTAAATTGTACCATCTTATTCCCGATTTTGTTGAAGATAATGGAATCATAGACAAACTTGTCAGATTGATAACTGACCCAGATCCCCAGGTAGTGTGCAACACTCTTTCAgcattggatgaaatcctagcaGCTGAAGGTGGTATACAAGTGAAAAAGAAACTCGCTCATAATTTACTGAAAAGaTTTAAAGCCTTCAGTGGTTGGGGTCAAAGTCTAGTAATGGAGCTGTTGATGCGTTATAAGCCACACAATACTGATGAATTATTTGACATACTGAATCTGCTTGATGATCGCCTCAAGCACCCTAACAGTGCTGTCGTCATGGCTTGTATACAGCTCTTCATCCACATGACCAAGAACATGGAAAACTTAACTCAAGATGTTTTTAAAAGAATTAAAGGACCTCTGATGACTATTCTCTCTTCAAGTAACTCAGAATTGGTCTATGTGTGTTTGTGCCACATAGAACTTCTGCTGACTAAAATGCCAAAGTTGTTTGATCAAGAGTACCGTTCTTTCTTTTCAAGgcACACTGATCTACAGTATATTAAAATTAAGAAGCTAGAGATCCTGACAACAATTGCATCAGTCTCTAATGTGGAAGAAGTTGTGACTGAGTTGAGTGCTCATGTTCATGATGTGGATGTTAAAATGTCGAAGGAGTCTATCAAGGCCATTGGCGAGATCGCTATGCATCTCCCACAGGTATCAGAATACTGCATTGATGTCCTCCTCTCATTCCTCTCCTGGGATATTGAATACATTACTTCACAGACTTTGGTTGTCATAAGAGACCTATTGCTGAAGTATGAAAAATCAGCcattgctgttctttctcaagTAGGACAATGCCTTGAAATAGTACAGGATCCAAAGGGATTAGCTGCAATAATCTGGATAGTGGGAGAGTATGGACAGTCAATTCCTGACAGTCCCTACATGTTGGAGCCTCTTGTGGACAGAATTGACTCAGAGCAGTCATCTGAAGTCAAACTTCAACTCCTCACTGCAACCATGAAACTGTTTTTTAAGAAACCACCAGAGTGCCAAGATATGCTGGGTCGACTCCTCAAGTACTGTGTGGATGAAGAAACTCATATGGATGTACATGACAGAGCTCTGTTGTATTACAGACTCATTAAAACCAACCCAAAAGAGGCTGAGAGAGTAGTGTCTGGTTCAAATTCCAAACCAGTCACAAATCCATGGAATGTGAATGCAAACACGTCTAATTCAAAGGAACACTTGTTTGAAGAATTCAACACCCTCTCAGTTGTGTATGGTCAGTCATCAGCTCATTTCATGACGTTATCCATCCCTTACATCAAAGGACAGCCATACACACAAGAGGAGAAGGCTGCAGATGAAATACCTCCAAACCAAAGAGAAGAGTTACAAGATGAACCAAAGATGCCATTAGAACACAATGTCGCTGTTGGCAATCTGCTGGGAGAAGATGTTAGTAATGAACAACAACATGAAGATCATGGAGAGGAGATTATTCTTGAGTTGACTGAACATCCGTCCTTGACTCCTGCCTTGTTTGAACAAAAGTGGAAATCACTTCCACAAAGCTCTTGTTGGGAGGCAGCCATGGTTAAACTTCCAACCACTCCTGAGGAATTTCAGCAGCACTTGTTGCAAAGTAACATTTCATTAATGGCCAGCAGTCCTCCTGGACAATCTGTTCAAAAATACTTCTTCTATGCACAGGAGGTTTTAGGACAAACTGTCTTCCTGGTTGAAGCAATTGTTGATATAACTACAAAGCTTCTGAGGGTTACAACCAAAGTAGAGGATTCGTCCTTAGTGCAACAGTTTAATCAACACCTTAGGACTTGCCTTGAAGGAGAATGGATAGAATGTACATGA

Transcript

BRAKERTYJT00000002525

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09066 all species →	B2-adapt-app_C	Beta2-adaptin appendage, C-terminal sub-domain	Domain	Interproscan
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026739 all species →	Family	AP complex subunit beta	Interproscan
IPR012295 all species →	Homologous_superfamily	TBP domain superfamily	Interproscan
IPR015151 all species →	Domain	Beta-adaptin appendage, C-terminal subdomain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR016342 all species →	Family	AP-1/2/4 complex subunit beta	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11134 all species →	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0030131 all species →	Cellular Component	clathrin adaptor complex	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12401	AP4B1; AP-4 complex subunit beta-1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.