Gene detail

Detailed information of BRAKERTYJP00000007796.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000007796

ATGCTGTTTTTGAGAACATTTCTTCTGGTATTCCTTGCATTTGCTAGAAGTCAAACTACGAATTTTGGATCAAATGTGAATCCTCCACATCCTTTCTTGTTTTTTAACGAGAATGAGATTCCAGTTCTTCAACACCGCGCGAGAACTACTCACGCTGAAATAGCGAGCAGGATTCGAACCACAGCTCAAGAGATTACACAAAATCCAGAGAAATATTTACCTCCGATAGAATGGTCTAAGTTCGCCAATGCTTGGAATGAACATTACGGTAACGACTTGACCGCGGTGGCATTCTATTGTGTATTAAATCCTGAGGATGTCAAGGCAAGAGAATTTGCGATTCTTTTTATGGATCGCCTCGAGAATCTGCCAAATTGGCGAGTCAACGCAAATCTTCATGACGATGTGCCTGTCGCGCATTCTCTGACCGGCATGGCAACGGCTTACGACTTTTTATACGCTCGTTTGAACGACACTCAAAGAGCTCGTTTCTTGAAGAAGATCGTCTCAGTGACAGAAGAATTGTATGAAAGATCATATGATAGGAAGTTATGGTGGGGGACATCCTACCTTCAAAACCATGTGGCCACAAACTATTTGGCCATTTTGACGGGCGCTTTGGTTGTCTCCAAGCATCACAGGGTTGACGGAGAAACATGGATGTCACGAGCTCATCTGATGCTGAGCAGAAACTTAGAGCTGTTAAGTTTTATCGTGGATGGTTCACTAGATGAAGGGGTGGCTTATGGAAGTTACACGTCACGCTCTTTGACACAGTATGTGTTCTTTGCGTTACGTCACTTTCGGGTTGATTTGACGCGCAACCCTTGGTTGAAAGAGCACTATTGGTTTATACACTATACGGTCCTTCCTGGGTTCAAAGAGACCGTCGGCATCGGTGACTCCAATCGAAACTGGTTCTACGGCCCAGAAAGCCAGCTAGTTTTTCTGGACAGTTACGTGCTGAGGAATGGTTTGGGAAACTGGTTGGCTCGACAGATCAGAGAAAACCGAGTCCTAAAGTCAACCTTTACTCAATCTTGGTCTCATCGAACTTGCATGCTTCACACAGAGTTTCTTTTCTACAATGCGAGCATCGCGGAGCGAGCTCAACCAAATCCGACCTTGCCACGCCTTCACGTGTTTAGTGACTGGGGGGTCGTTACTTACGGGGGCGGCGTTACATCTCACCACAATAGCTTAGGACACCCTCTGGTTGAAGGACAAACATTTCTCTCTTTCAAATGCAGTGTTCTTCATGGAAGGGCTGTTAACTCTATTGTAAGAGGTAAACGCTTTCATTCATGGACAAAAGGATGGAAGTTTTTCAACCCTGGACACGAACATCCTGACCAGGGGTCGTTCGTGTTCGCCCCAAATGGAGTGCCTTTCATTACTGACACATTATACGCTACCAAATACACCTGGCTCAATAATGCCATAGTATTTGGACCTTCTCCCAGTTCAGAGTGCTTCGCTCCTTTCGAGGGGCAGATAGGAGAGTGTAATCATTGGTTTAATTTCAAAACAAGGTCTGCTTGGAAAGCTGAAGGAGACGTTATTTCTGCATCAAGTGAAGGTGACATGTTGTTCGTCAGTGGGGAAATGAGCCAATGGTATCGCGCGGAGCTGGGCCTTCTGAGCGTGTATCGTAGCCTGGTGATGCTGACTCCAAGCGTCCTTCTTGTTGTTGATCACATTGAACGGAAGCAAGGAGGGCATGCTTCGATTATGAGTGCCTTCTTTCACAATGTTGACCACCCTTTTGTACCTAGTACAAGCTCTCCAAGAGGTACACATGCTGGCATATCAATAGATGGTCGTCTGCACGAGGTATATTGGTTCAACTTGGGGTACGGCAAAAGCTTAGTCCAAGCAAAAGAGCATTTAACAGGGCACAAATCAATGAAGACAAACTACCTAAATGTGACCACGCCCTTAGAAGCGCGTTTTACTAGAACCGCGTACCTTTTCCTGGGCCCTGGAAACAGACTAGAACCCCCTCAAGTACTAAATTCACATGATGATGGATTGAAGCTGCTGTTGAGAGTCAACGAAATGGAATATgttgtttccatggcaacacgaCATAACCAACCCTATTCCAGATACAGTTTTTTGGGCTTTGGCGGATTCTGCAAAGTTCAGATCAATGACATCAAAACAGTACGTTTCGGTTTGGATGTCATTTCTGCATCTGATACGGATGATGCAAGTTTATCGCGCAATGGAGCAGACTTGTCAGTTATCTGGAGTATTCATGCTTTGCTCTTTCTCACTTTTAGCATTTCATGCACTTTGCTGCTTTTTTACTGCCAACTTCGACGCAAAATGGTTGGAAGAAGCATATGTAAACTTGTCGTATGGAGTCTTGCAGTGCTGTGGGTGATCCTAACTATCGTGATAAACTTTGATTTGTGCACCGGTAAAGGATGTTCGTGGACAGAACCAATAGATCTCAAAACTGTAAACGATAACGCCAATTTTGAACACAAAGAAGACCcgccatttgttttttacactTCTCTACCGCTAGCCGGGAGTGAAATTCTGCATTACTTGTTCAAGAATAACTCGGACTTTTTTAACGCGGGTCTCCCCGGATCCACACATAAATTTATGAACCCTTGTGCGGTATACACTCGCTTTCATCCCTCCAACGATACAAATAATCTTAAAAAATGGCTGAGAGCTCTGTCGAAAGATCCGAAAGCGCTCCTACTGGACTTAGCTAAAAGATCCCGTAAGGCTTTACCGTCGTTCCGACTAGGAAATCCTGAATGGAACATGAAACTGACGTGGTTACGAAAAGTCGTGGGACCTAGAATGCGTGCTGTTGTTGTGGTGAGAGACCCCAGGGGTTGGGTAAACTTATGGCTTCAAGAAATGCGGACAGATAACACACTTCGTAGTGCCGTACATGAAGCAATTCATGCGATTAATGAACTGAAGTGTCTAAAGAAAAATATGTCTACCTTTCTACCCGAATTTGAAGAAATGCGGAATGTTGTACTTAAATACGGAAACGACATAGATGGAAACATTATTTCGCTTCTTTCTCATCTCTGGACATCGCTGATGAGCGCTACATACAGGACAAATGTTAACCTTCCTCAGGAAGCCATTCACTATGTGCATTTCGAAGACCTGATCAACAAGCCTCGTAAGACTGCTCAGAGATTGTTTCAATTTATAGGCGTTCCTCTCTCGCCTGCCACTGAACATCGTATTCTCACCGCTGTTAGAACCGCACAGTTCGCTTTGGGCGCATCCCGCGAGGTGCTTGGAGCTAGGGCCGTGACGGCCTGGGAACGAGAGCTGCAAAACACAGACGCTGAACAGATTAAAGAAATTTGCTCTGCAGTCATGAGCAGATTTCGTTATGCTGTTGATTAA

Transcript

BRAKERTYJT00000007796

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00685 all species →	Sulfotransfer_1	Sulfotransferase domain	Domain	Interproscan
PF16332 all species →	DUF4962	Domain of unknown function (DUF4962)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008929 all species →	Homologous_superfamily	Chondroitin AC/alginate lyase	Interproscan
IPR000863 all species →	Domain	Sulfotransferase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR052447 all species →	Family	Dermatan-Sulfate Isomerase	Interproscan
IPR032518 all species →	Domain	Heparinase II, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15532 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0030204 all species →	Biological Process	chondroitin sulfate metabolic process	Interproscan
GO:0030205 all species →	Biological Process	dermatan sulfate metabolic process	Interproscan
GO:0047757 all species →	Molecular Function	chondroitin-glucuronate 5-epimerase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01794	DSE; chondroitin-glucuronate 5-epimerase	EC:5.1.3.19	Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate	ko00532	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.