Gene detail

Detailed information of BRAKERTYJP00000010059.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000010059

ATGGCGGATACAGCAGATAGCAAATTTCGCGAAATGAAGGAAATATTATCCTATCCAGAAAACAGATTGAAGAATTCCGTGAGTTTGTTGTTGGAAGCGGCGGCTCAAGTTGGAGAATCGGTAACCTTTACTCACGTGGACGAACTGGCACTTTCAAATATGAAGCTGTTTACTTTTGAGGTGAAAGTTGGACGTCTGCTAAAATGTAGCGGAACTGGATATAACAAAAAGGCGGCTAAAGCGAATGCTGCTGAACAGGCTTTGGAAATGGTTAAAAACAGAGCTGCTGTTGCAAGTGGGAATTCACCTGGATCACGAACCTCGCAGGTGTCACCAAGCCATTCTGCCAATCCTGCAGCAGCTTTTATCCCAGCTGCTGGAGACTCTCCTAACACAGCATTCAATCCTATTGGTAGCCTGCAGGAAATGTGCATGAAGAACAAATGGACACCACCAAGTTACAAAATAGTTCATGAAACAGGGGAGGCACAAACAAAGACTTTCATTTATGAATGCAAGaTTGACTTATGGGGGGTTGCTCAGGGGcaaggaaaaaacaaaaagtCAGCCAAGAAACTCGCTGCAGAAAATATGCTGACCTTGATAAGAGAGACAATAGCTGCACACTATCAAGAAGATGCAGATGGGCTTTCAACAAGAATGAAAAAACCTTTAGAGCCAGAATTCCCTGAAAAAGCGGTTCCTTTAGAGATTAACTTACGTGGGCCCTTGGCTTTGGAAGCCTACAACAAAGCTCTCTCTGAAGGAAAGGCTTGTGTCAAGAGGGTGCCGGTCATGCTGATTGGACAGGACCGTTCTGGTAAGACAAGCCTCAAAAAGTCGCTTATGGGAAAACGCTTCAATAAAGATGAAGACAGCACTGTTGGGATAGATGTTGATCCATCACATTTTAAAGTATCAACTGAGATTTGGAGGGCAGGAGAGAACGATCAAGCAACACATTCTGTAGAGGCCATTTCCTATGAGCACCACGCGGCTCGTTTGGTTGCTAAACACTTGAAGGAGGAAAAGCCTGTTGGAGTTGGGGGTATGAAGTCTGTGCAGTCTGGAGACATTCCTCTAGTTGATACAAAATTAGATGACAGGAAACACGTTCCCAACGCCTCGTCAGATGATACATCTGATCCAACTCAATGGAGGGAAGGACACTCGCCGCTCGCCCTACCCGAGATACCAGATGAGGTAGCAActttgattaaaaaaataataaaagaagtTGAGAAAGTGAaagatgaagaagaaatatATTCCGTTTTGTGGGATTTTGGTGGACAATCTGTTTACTATGCAACCCATCCACTTTTCATCACACCAAGAGCAATGTACCTTCTGGTTTATGACCTCAGCCGGGATCTACACGAAAGAGCTAAACCCGTTGTAAAGCAAGGAATGTTCAACGAAATTGTTGACAACTATAGCGTGAAAACCAATCTGGACTATCTTAATTTTTGGATGACATCCGTTGCTTCCTTAGCCAGTCAAGACGAACACCAGCAAGTACGTTTAGGATCTACATCTGAGGTGCGGCGAGTGAACATTCCTCCTGTGTTCCTAGTTTGCACCCACGCCGATGAACCTTGTGGCAAAGCAGATCCATTTGTTCTCGCCCATAAGGTGTTTGATTCTCTACAGAGCAAGTCCTACAGAAACCAGTTGTACGAAGATGTGTTTGTCGTTGATAACACAAAGTCAGGCACTGAATCTGAGTGTTCAGAAGTAATACGCTTGCGGGAAAACGTACATGCTCTTGCTATGGAGCTACCACAAATGAGAGAAGCCATCCCAATCAAGTGGTTGAGGTATGAGAATGCTCTTCAAGCCGCAGCGAAAGACGGGCGTAAATGGATTTCTGTTGAAACGGCAAAACAAATTGCATCTGAAGTATGCAAAATTGAAGATGATCAAGAGTTTGTGATATTGCTGGACTTTCTCCATGACCAACGAATCTTGATTCATTTTGATGACACTCCAGTTTTGAACAATATGGTTGTCTTGGACCCTCAGTGGTTGGTCAATGTTTTTAAGAAGGTGATAACTGTTAAGCCTTATCAGCAAGAAGAAAGAGAATTTAAAGAGTTGTGGTGTAGGCTCGAGTCAACAGGAATCCTGGATGAAAAACTGTTAGAACATGTGTGGGGTCCTTCATTAGACCAGCAAGAGACGTCCGCGAGCCTTATTGAAATTATGGAGAAATTCAGCTTGCTGTGTCCTTGGCCTTCATCAGATGTTTCATGTGGCAAGCAGTACCTGGTGCCATCCATGTTGATGTCGCATCCACCGCAGGATATCATAGACTTGGTTGCCTCTGCACAAATTCCTTCTCTTTTCCTCAAGTTTGAATCTGGACAAGTTCCTCCAGGCTTATTTCCCCGACTTGTGTTGCAGTTCTTTCAATGGGACCAAGGTGAATTTTGGAGCGCAGAAAATCCTCAGTTGTACCACAATTTTGCCCGATTCTACACTTCTGAAGACGAAGACTGCTCTGTGATCCTTTTATGCCATTCCTCGTCCATTGAGGTTGTTGTTCACAGAGGAAATCTCAGTGTTGACTTGACAGAAAGTTTACAGTCCAAGCTGAACATTTCTGCAGATGTCAACTGTGATGCATTTGAAGTGGCCTGTGCTCGTGCTGTGCGTAGGAAACTAGGACTGATTCTTGAGTGCATGCGTAAGGAGTTTTGCTGGTTAAAGAATATGAAGTACGAAGAAGGATTCATCTGCTCAGTCTGTTGCCAAGGACATGCAGTTAAATATTGTTGCACTCATCACAAGCAGGGTTGTGAGCAAGAGGAGTGTCTGCACTTCTGGTCTGAGTCCGACTTGCCCAGTGCCAAGGAGTTTGTGAGGTGCCGCAGGCGTGCTACTGCCACGATCGACAAAGTTTACGTCAAGCGGTTTGCACCCTGGATTGGTGAAACTTCAGGTGAACAGcgtacaattgaTGAAAGTGATGGAAGACTTTTAGCTCGTGAGGGAGgaaatgatgaaaaattgctTGCACTTCCTACAAAGGCTCTAGAATCACTGTTGTCGCAAACGTGTGATTCCAAAGAAGTTGTACTTCAACTGAAACACTGTATGCAATTGGATCAGGCTTCCTTGGAGCAGCCAGACCCTGTGACCAAAAGATTGATCCGTTGCCTGGCAATGAAAGCGAAAGAGTCAAGGAGGCTTGATGTGGTCAAACACCTCAGAGAAATTACACCAGCTGGGACTACAGGTCCGTTGTTGCCTGAGCGCCTTGATATTCGGAATATTCCTGTTCGCCAAATGACAAAACTTACAGTTGAGTTGAGCGGCGGAGAGGATTGGAAGTTGGTTGCTGAAGAATTGGGTTTGACCCCACAAGAGATTCGTTTCCTTGACAAGCGAACTTTGAACCCATGTGAAGCTGTTCTGGCGTTTATTTCCAGGCAGCGCGACGTAAGTGTGGGTGCCCTGTACGACGGGCTAAACAAATGTGGGCTACCTGTGACAGCAGACATTCTTTAA

Transcript

BRAKERTYJT00000010059

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR051247 all species →	Family	RISC Loading Complex Component	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46205 all species →	LOQUACIOUS, ISOFORM B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016442 all species →	Cellular Component	RISC complex	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0035197 all species →	Molecular Function	siRNA binding	Interproscan
GO:0070578 all species →	Cellular Component	RISC-loading complex	Interproscan
GO:0070920 all species →	Biological Process	regulation of regulatory ncRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERTYJP00000010059.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.