Gene detail

Detailed information of BRAKERTYJP00000012155.1 in Cladopsammia gracilis

Genomic Location: JAJGOT010000052.1:1274627...1289151
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009453 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00056 all species →	Ldh_1_N	lactate/malate dehydrogenase, NAD binding domain	Domain	Interproscan
PF02866 all species →	Ldh_1_C	lactate/malate dehydrogenase, alpha/beta C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001557 all species →	Family	L-lactate/malate dehydrogenase	Interproscan
IPR011304 all species →	Family	L-lactate dehydrogenase	Interproscan
IPR001236 all species →	Domain	Lactate/malate dehydrogenase, N-terminal	Interproscan
IPR022383 all species →	Domain	Lactate/malate dehydrogenase, C-terminal	Interproscan
IPR015955 all species →	Homologous_superfamily	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43128 all species →	L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0019752 all species →	Biological Process	carboxylic acid metabolic process	Interproscan
GO:0004459 all species →	Molecular Function	L-lactate dehydrogenase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006089 all species →	Biological Process	lactate metabolic process	Interproscan
GO:0006090 all species →	Biological Process	pyruvate metabolic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00016	LDH, ldh; L-lactate dehydrogenase	EC:1.1.1.27	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.