Gene detail

Detailed information of BRAKERTYJP00000012640.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation CGRAC2 · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000012640

ATGAAACGGCTACAACAACCAGATACTCTTGCTTCAAAGCAAAGAAGGGATTTGGAAACACAGGGTGGTGACCACGCCTATCGAAAAAATGGCACCGGGAAACTTCTTCAAGAATCTAGAAAACTCAACTGTCCTGCACAGGTACACATGAGGGAAATCATCAGATTCCCAGATTACAAGATTCCAGAAAAGACGGAGTGGCGTTGCAAAAACCAATCGAAAAAGCTGCGAGATGCTATAAAGGAGGGCACCGCAAAAAGTGAAAAGTGGATTCATGTCCTTCTTCCCTCCGTTGATGAACACACCGTGCACCCAACCGGAGATGCTGGTGGTCTTTATCAGCGCATCGATGAAAGACTCGTACCAAAAATCCAGGAGCTAGTATGTGCAGGGGCAAGATCGGAAAAAGAAGTACGAAGACATCTAAAGATCTTCGTGCAAAGCGAGGTGTTCCGAGGGAAACAACCCCCCCAAAAAACCAATCGACGGTTTTACCCGTCCAAAGCAACTATAAGAAGCCATATTTACAAGTCAATTGTCAAAGAAAGGTTCTCCAAAATTGACCAAGAAGATCTTCAGAAGAAAGTGGAGCATTGGAAGGAGGACTCGCCCGCTGACTCATTCGCATTCCATCCTTATGCAGCATATTCCACTGAAGAAGAAAACCAACCAGAGATTGATCAGGAAAGCGGCAGTGATAGTGAACAGGAGGATGAAGAAATGGTGAAGCCTTCCACAAAGGGGCTCCTGTTCGTACACCAAACAAAAGATCAGAGACGGCTGTTAGAAAGATATGGAAATGAGATGAGTATGCTGGACGCCACCTACAAGACAACGAGGTATAGCCTCCCCCTCTTTTTCGTTGTTGTAAAGACCAACGTTGACTACCAGATCGTGGGCTCGTTCGTGGTTCAAAGTGAAACAACGGATTCCATTTATGAGGCATTATCCGTCCTTAAGTCATGGAACCCCGGGTGGCAACCTTCCTGTTTTATGCTGGACTACTCGGAGGAGGAAATGTCCGCAATTGAAAAGTTATTCCCAGATATTCAAATCTTCATCTGCGATTTTCACCGTGAACAGGCGTGGGAGAGGTGGTTGGCAAAATCCACCAATGGTCTGACGGAGAATAAGCAGACAATTCTTGCTAAGCTGCGAGCGATAGCCAGGTCCCGAACAGAACAGGATTACAGTGAAAAAGTGCACGAATTAGAGGACAGCGAGGTGTGGCAGTCAAGTACCAGCCTCCGGAACTACATCACGAAAACGTGGCTCCCGCAACACAAGAAATGGGTGTGGGCGTTTCGAAAAGACCGTTTTCTCACCACAGTTAATACCAACAATGGCGTAGAGCGACAGAACAAGGCCTTTAAGTACGACTACTTGGAGGGGCACAAACACTCCACTTTGAGTAGGATGCTGTCCATCCTTATTGAAGATTTTCTTCCTGATAAATATCTCGGgtacGTGGAATTAAACACGAAGCTGCAAGCTGGCTTTCGTCGTTACAACCAAGCCATCCCTTCGTATTTGAGAGAACGACCACACTATATCATCAAACATTGTTTGGATCGACTTTCTCTTGCAGAGTTAATTCCCAGTAATCAGGTCGATGTTATCGACATGACGAACGGAGTGTTTTCCGTTAAAAGCCAAAGTTGTATGGATCGGGATGCAGATAAAACCAGTTACCGATTACAGTTTGGAATTGGAGCAAGCCAACCAAGCTGCGAGTGCTACGACTGGGAAAGGCATAGGTTGCCATGCAAGCATTTCTTCGCCGTTTTTCTTCACATTCCATCATGGCCGTTTGACAAGCTTCCGAGTGCATATAAAGATTCGCCTTTTCTGACTCTGGACGAAGAATTGTTTATTCCTGACAAGGAAGATTTAAGCGATGGTATCAACCAAGAAGCCGTTGAGGAACTGCTGTGCCAGTGTCAGGAGCAAGTTTCAGAGGCGCTGGTTACCAACACATATAAGACAGTTAGATTTCAGGATCTACCACGCACAGGTACCCGACCAAGAACCAGTTCTGCAAAATGTCGCGAACTTTTGGGCCAGTTGAAAAATCTGACGTACATTGTAGAGGGCTGGGGTAATGGAGAGGTCCTAGAGCAAGTAAAGGTAAGGCTAGAGGAATGCCATGATCTTCTTCTGAAGGCAGCACCGAGAGAAAATGGTGTCGTTCTTGAAGTTCCTCCACAACAGTCAAGACAGAATACAGTTGGAAAGAAGAAGCGGGGAAAAAAGCAAAAGAAGGTCGTCGACTTCAAAAGTTTACCAGTTCGTGCTAGGAGAAACCCATATACTGGACGAGCCGGCAAGAAGGCGAATGAGATGAAAAGATCTTATAATGTTTCCAGTTTGCGTGAAATTGAAAGTACGCCAGCCAAACAGCCTAAACTGAGTAAGGGTGCAGTCAAAGGTGAAGTCTTGAAAGTTGGAGATAGTCAGCATGAACAGCAAAGTCCACCTCAGGACGTTACTCCGCAAAATAATGTCACAGCTGCAATCATGGATGAGGACACCCCCAAGAATACTGTCCGCAGCCCCATCTCAAACTCGACAACTGATAGTGAAGTTAAAGTTATTCGGACTGTGAATGGCTGCACCCCCAAGAATGGCAGCTTCCTCCTTGCAGAGCCAGACGTTAAACTAATTGCATCAGGAGAGTGGCTAACAGATCACATTATCGGAGCAGCTCACACGGTCATCCAAGGTATGGAAAACACCACATTGGGGCCAGTGTTCAACTTCTCGGTACAAAAGGGGGAATTTGTACAAATCCTATACACAGGAAGTCACCACTGGGTTTTGGCCTCCAACATTGGATGCTTAAACCACTCAGAGGTCAACCTTTACGACAGCCTGTTTAGAGGACGTATCCAGACTTTAGTCAAAAAGCAAATAGCATCTTTGCTTTATGAAGATGCGCACTCCTTCAAGATCACAGTCCCTAGAGTACAACGGCAGATCAACCACGATGACTGTGGGGTGTTCGCAATTGCCTTTCTGGTCTCACTACTCCATGGCCTAAATCCGTCTGATCAGACATTTGACAGTGGAGCGATGAGACCACATCTACTGAAGAGCCTCCAAAATGCCTTTTTTGACCCCTTTCCTCTCTCAAAAGTCCAGGAGAAGCGAGACAGAGAACCAGCCTTAGTCGAGGAGGTCCCTGTAATCTGCCAATGCAGGATGCCGTGGGATAATTCTGACCAAAAATCTCCATCTCTCTGGTGTGCCGAATGCAGTTCATGCAAAGAATGGTACCACAGGAAATGCGTGCCTGCTATTCCACACATGATTTTTAAAGGTTCAAGTGCGACTTGGTGTTGCCCAAAGTGCGAGCAAGATCTCAAGCAGAAGGAGAAGGAATCAGGAAGGCCGATGCCTTAA

Transcript

BRAKERTYJT00000012640

Protein

Gene family

Family type	Membership / link
Ubiquitin family	DUB\|ULP\|ULP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21056 all species →	ZSWIM1-3_RNaseH-like	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain	Domain	Interproscan
PF15299 all species →	ALS2CR8	Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8	Family	Interproscan
PF02902 all species →	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan
PF04434 all species →	SWIM	SWIM zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048324 all species →	Domain	ZSWIM1/3, RNaseH-like domain	Interproscan
IPR029309 all species →	Family	Calcium-responsive transcription factor	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan
IPR003653 all species →	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47456 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERTYJP00000012640.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.