Gene detail

Detailed information of BRAKERTYJP00000016643.1 in Cladopsammia gracilis

Genomic Location: JAJGOT010000080.1:173787...192165
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERTYJT00000016643

ATGTGTGAATTTAATTTAGCATTTTATATTATTACCTTGGCTATTTTATGGTCGCAACCATTCTGCAAAGGAGCAACACACTGGACAGTCACAGAAGATGGAAGAATTCAACAGCAGGCTGATTCCATCTTTAATCTCAAAAGTCCATATGACTTGGTCACATTCATTCATCAGCAAAGTGCATTTGACAGACTTAAAGTTTTACGAGAAGAGTACcttgaagaaaaaagaaaggtgATAGAAGCTAGAGAGAAGGAACGAGAGGAGATACAAAAATCTTTTTACAAAGTGGATCCAGATTGTGTTGATGCAGGAAAACACATTTCAGAGTTTGAGTTGCATCTGGAGATGACTCTTCCTTTTGGGAAAAAAGGCATCAACATACCAGACCATGTCAACCTATGCCAACCCCTGCCATCACACTTGGATCCTCCTTACTGCAGAACAGAGTTGCCAACTGTCATATACAGTTATGATCATCTTGAGGGTGTTAATGGTCGATATCAGCTGAACACCAGTGCAGAGCCAATGCTGTTGTCAAGCTTTTCGTCATATTTTAAGACTGTAGAAGAGTTGGGAGGACGTGTGAGTTTGGCACTAGAAAGGAACTCCAGCTCTTGGGTTCTACTCAATCTTGCAGCTTATTACTGGAGAATCAAAGGCAATGCCTTAGAGGCTGTAGACTGTCTCCGTCAAGCTTTGTATTTCTCTCCCAGGGAGCACAAAGACCGTGCCTTGATGAGTCTTGCAGCAGTGCTACATCACACAAATCACAGCCACGATTCTCTGGTTCTGTTTCACACAGCCATTGATATAGGCAATGAACTGTCTGTTTATCATTATCTCCTTGGAAATATTTACGCTTCTATGAAACTGTATGAAATGGCTGAATTGTGCCACCGGTTCACGCTAGTGGTTTCACCTGACACTGATTCACTATGTGAACGGGTGAAAGCAGTGAGGTGTGAGCTGAAACTAAAGGAGCTTTTACATGAACGGCAATTAGATTTTAATGAGACATTGGATAGTCTAAAAACTCCAGAACTGGATTTAACTAAAGAACTTAGCAGTGAAGCAGTGGCGAAAAAGCAATTTCTTCCTCTGGAGACGTACAAGAGGCAGCTTGATCAAGTGTACACTGCCATACAGGGGGTAGCTAAACAGATAGAAACATGCAAGAGCAGACCTGGCCAAACAAAACACGATTTGGACCTGTCATTTGATCAAGCTTCAGCAAAGGAGACGCATTCAGGTcaagtaaaaagaaaagaagccgAGAAATCTGCTCACCGTCAAGAATACGGTAAACATAGCCATCAAACTGAAAATACAAGCTCAGGAATACAGGGTAAAACGCTTGAAAAATCCATGGTAATCACTGAAGATGTCAAGGCTACTTCTTACTCTGAGAAAAGCTCGCAGAAATCTAGCGATACAAATAACGAAGAAAGCGAGAACTCGATTGAGAAAGAGAGTGGCAAAATAAGTGAAACGCTGGAAGCTACAAATTCTCAATCGGATAATTCTAATATTTCAATGGAAGAGAAAACCATGCAGAATCTTGAAGAGGCTCGTTTGGCGCTTAAGCGATTAAAAAGTATCATCAAAACTGTTAGCCAAGCTCGCCATTCTGCATTAAACACTGTGGATGTTGCCGAAGAAAAGTCTTCACAATTTGATTCAGATATTGATAGTGAAGATGGTGTAAAAACAGCTCCAAGTAAAGTGAGTGCCATTAAAAGCACGCAAACGGTGATCCAAAAACAAAGTACAGTACAGAAAGCCTCCGGAAATCCACATCGTACGGGAAGAAGAGGAGAAAGCGGCTTAAAAATGCCAAAAAGCGATTCTGGTAGAAGAGAATACAACGCTAATACAGTTATTTTAGAGGAAACTAAATTTGCCAAGCAAAAAGGAGAATCTGtagtaataaataaaaatggtccTGGAATAAAATTGGACACGATGGCTTCTAAGAACACGCGGGAAATTTCTGACGCTGAGTTTCTGTTTGAAGAACCAAAAGGAAGCCATCCGTTCGGACCTAAACACACTCCACCTCTTGAAAATAAAAACCTGTTGGTTCAAgctaaaaaatgtcaaaatgttgGTAGGAAGAAGCGAAAGGGAGAAGCGTTTGCAATGGAATGTTTGACTCAAGACGCGGCGAGCACACAAACACAGGGCTCAACTACTGACATTGATTTGCCTAGTCAGAAATCTGTCACCAAAACTGAGTTTTCAAAATCCGCAATAAATTCGGAACAAACCGAAAGTGATCCTTCTCAATTACAATCTAATACAGAGACAGTTTTAATGAAGCAAACTTTAGCGGAAGAAATTTCAACCACAACTTCGTCAAACGCCAATGTGAGCGACCGTTCTTCTGACGGGAAAGTGCACGAAAAAAGTGAAAGAAAGTCTTCGTCTGTTGATGATGTTGTTAAAAGTGTAACTAACGatgaaaaaggagaaaatggaaaagaaaatgaCGAAACGTCACCTCAGGGCGGTGAATATTCTGATTCAAAGGCAGGTGAACAAAGTGAATCGAGAGTTTATACTGAAAATGTTATGAAAAGTAAAGCAGACGATAAAAAAGGCGAATCGTCTAGAAATTCTGATGAAAAAAGCAAAATGAAAGCTGCTACTAAAGATGGTGTGAAAATAAAACCTAGCGAGAAAGAAAGCGAGATGAAACAAAATGATGAGGTGGCCTCTAAAAATTGTGATGCGAAGGTGCTTGAAAAGAGCGAATTGAAAATTTCTGCTGTTGAGGATGATGGGAAAAGTAAAACCAACGATAAAGAAgttaaaaattttaaagaaCCAAGCCTAGAGAATGAAAAACGCGAAATGAAAAGTGATACTGCACGGAATGTGAAAAGCAAATCCAGCAATAACGGAAATAAGAATTTAAAACAGCATGAGCGGGCGGCCCCTGGTAAAAATCCCGAAACAATAAACAAAGGACACAAATCGACGTCATCTAAACCAAAAACGGAGCAGACGGACACGGATTCTAAATCAGGGAAGGCGATCAACAGTGATAAAGCGGCGCAAAATATCAAGGAGAAAATAAAAGAAGCGGAATTTCTTCACAGAGTCGGAGCAGGTTCAAATGTGTTTGAAACAAGTTTCCTGAACGTTCACACTAGCGGTTCATTGCATGAACTGAGTGATGAGGAGTGTAAACACATCGAGGGAGTACACGCGCTTGTTATCAGGAACAAACAGTTCAGCGCGTGGCTGTCGCTGGACACCAAAAATATCGATGTGCGGACACATGTTGACTTCTTAAGTGAAGTAGACGACTTACTCAAGAAGCCCCGCTGTACtgcaaaaataaaaagcaaTCTGCACACGTTCGGTAACCTTCAGGGTGTGGCGAATGCCGATAAACTGGACCAAGTGGCTGAAGCTGGTCTCACCCAGaCTCTTTTGACAATTGGGAGAACAATACAGGACAGTGTTGATGAAATGGGAACGAGAATCTACAACGCTTTGAAAAAGAATTCTACGTCttgggtgatactaaatatCGCTTCTTTATACTGGAGAGTTCAAGGAGATACCGCTGAAGCTATCAAGTGTTTACGGCAGGCGCTTTATTTTTCTCCACCCGACGCGAGGGATGTCGCTCATGTTGGTCTGGCGAGTATTCTACTACGGGAAGGGCACCTAGACGACACTGCTGTAGTAATAAAAAAGGCTTTGGAGatttctCCTAGTCTCGCTCTCGGTCACTTCATTCTTGGCAATGTTTTTGGAGCTCAGAGTAACATTCCCGAGGCGATACAGCATTACTTGCTCGCCCTACAGCTCGAGCCAGGTTTTACGCCTGCTGTGGAGCGTTTAAAGATCATTCAGTGTGTTTTGTGGAAACAACAGCAAGCTTTAGAAAAGGAAGCTAACGATCTTAGAAAACTGCTGAACCCAAATTAA

Transcript

BRAKERTYJT00000016643

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006195 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13176 all species →	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR052630 all species →	Family	Tetratricopeptide repeat protein 17	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16091 all species →	TTC17 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24931	TTC17; tetratricopeptide repeat protein 17	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.