Gene detail

Detailed information of BRAKERTYJP00000017935.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000017935

ATGTCCCGTCTTGCAGATTATTTTGTCATTTGTGGAATAGACAGGGACTCAAAAAATGgaGAAGTCAGAGGAAGGGTGATTCAGCGCTTCCCAAGTAAAGACCGTAAAGATGCAACCTTTCCAGAAGGAATTGAACTGTTCTGCCAACCAGGAGGATGGAATTACTCATTCTACTGCAAACCACCAACATTCTTTGTTGCCGTCCTCACGGACATGGAGGGAGACCACCGATACTGTGCATGCTTCacattttatgaaaaatgcactCCAGCAAAGTCCAAGAAAAAAGTAGTGAAGTCCAAAAGTACTGATGGATTTAGGGATGGCAGTCAGTCAGATTCTTCGCTATCGGAGAAGCGATTCTCTGAAGGCGTGCCTGGGATCTCTATCAACACAGATGAGGTAGCAATGGATTTGTTTGCTCCAAAATGCTTGTGCCTTGTTTCAAGAGCGAGTTACTTTGACATCTTAAAGAACTGCCTGACAACAATCTATTTGTCATTTCTATCTGGAAACACTAAATCTTTGGAAGGactggttggctgcatcttgggTTTTGTTCAGGTGCCACCTCCTGGTGGACCCAAGATGACATTTTCCATGGGAGCTGGTGATCGTCACACTCTATCGCCGCCTGCTTCTGAAACACTTCCCGTGactggcaaatcagtttctatCTTGTTCAATCAGCTCGGTATCCATAATATGCTGGCCCTATTCTGTGCTGCATTAACAGAGAACAAAATCTTGTTCTACTCAAGCAGTTATTCACAGTTAACCCATGCTACACAGGCCATGCTAGCATTGATGTATCCACTGAAGTTCAGTTATGTGTTCATTCCAATATTGCCTGCTGCTTTGCTTGAATTCTTGAGTGCACCAACACCATACATCATGGGAGTACATGAAGGCTACAAAGATAATGTCGCACCTGATTTGGGAGATGTAATTCTTGTGGATATCGATGGAGGACATATATTCATTCCTGATGCCATAAACCTCGCTTCATTGCCAGAACCTTTCTTTAGCAGGACAAGGCATGAATTAACCCTGGTGTTACATCCACAACTAGTGACAGCAGACTGTGCTTTCCAGGCTCCAACCTCACCATCTCTACCACTGCTACAGGACAAGGAATTGCGAGCTGTGTTCATCAGGCTGCTTGCCCAGATGTTCTCTGGTTATCGGTCATGTCTTACACTGATCAGAATCCACCCTAAACCTGTCATAACATTCAACAAGGTTTCTTTCCTTGAGTACAGAGGCATGATTGGAGATGCATTCCTATCTAAGGTATTGGAGAGCATATCATTTCTGTCATTTGTGGCAAACCGAGGTCCTCCTTACAGAACATGTGATCTGTTTGACCAGCTATCTGTGGAGATTGACAGCCTTCTGAGCAGTGAAGGGGGATTAGATGCTGAGATACAGGCCAACATTCAGCAACTTGCACAGAAGCTGTATGATAACGAACCATCTTGTGACACAACAGAAAACAACATCCAACCAGTTCCCGCAGATGAAGCTGAATTGTGTAGCAAACTGGTGTTTCCTGAACTGAGTGAATTAGATATTAGCCAGTACATAGACCAGCAAGAGAACATAGCTGCCCCGTACACAGTGAAAAGTGCTCAACCCTGTGTTGTGCCTTCAAATGCAGTGTCAAGCAAGCAACAACATTATATTCCAAGTCGGAAGCTTGAGGTGTTGAGGGATTGTGTAGCGTACATCTTTGACAACAAGATATCTGAGGCTAGAAAGACTCTCGAATCAGTACTTCGAGCTCTGAAGTCAAAAGGAGCTCAGCTAGCCTTGTGCCATGAACTCTCCCTCAGAGCCAAACAAAACAGATCACTTTTGGAGCATGACCAGTTTGACTTGGTTGTAAGACTCATGAACAGAGCATTGGAGGATGATGCTAGTATGAGTAATACAGAAGTGGCTGCCGCACTCTTACCTCTCACAGCTACATTTTGCAGAAAACTGAATGCTGGTGTTATTCAGTTTGCTTACACCTGCGTCCAAGATCACCCTGTCTGGGAAAGACAGCAGTTCTGGGAAGAAGCATTTTACACAGATGTCCAGGCACAAATCAAGCAGTTGTATGTGGACGAGGAAGCACCAAAGGCAAATGCTGAGGACACTCTAGACGGGACGGACCAACGTACATCCCGTAATGTCAGCTTAACGCCAATAATAAAACATCGTAGCTTTTCAAGAAGCAGAGACAACCTTGCATCGTCACCGAGGGACTCTGGTGGAAGTAACAGCGATCTGGAACAGCCTAAACAAACAGAGCCAAAACTAATCCCAAGTGCACTGAGTATTGCCGCTAAGCAGCTCAGGAAATGGCCCAACTACAGCAAGATGGAGAGAGACAACTTGATAAACAGTGAGGAAGGCATTGTGTACAGCCAGGCAATTCATTATGCCAATCGTATGGTATACATGAGGATTCCTCTGGATGCAAGTGAGAAGATGCCTCCACCCACTCCTGCAACAGGTACATCTCATGTGGATGGTGAGGGATCTATCAATGGTACCTACATGGGAAGCATAGTCAATGGTGGGGCTGGTGCAAACAGTGAAGTAGGCAGCTGCATAACGGATAGTGGAGGATGGGACAGCTACATGGATGATGAGGATGGTGGAACTATTGCTGACCAAGTTTCAAAATTTGTCTGTCGATTTGTGGATCGTGTTGGCACCGAGGCTGGCATTAGTCAGGAGCACTTAAAGTCTCTATATACTATGATTCCAGGAGTGGTTGCCATGCACATTGAATCATTGGAGCCAGTACATAGGGAGTACAAAAACCTGGCTCCTATTCAAAAGGCCAAGATCATGAGACCCGCCCTGCTGCAGGGAGAGGAAATGCTGAGTGATGGACTGCGAGCCTACCTTGTACCTGACGGCAGAGAGCTAGGGAAGGGAGGAGAAGGACCATGTCTGCTGCCTGCAGATGGTGCTGTGTTCTTGACAAACTACAGAGTGATCTTTAAGGGTACTCCTGTTGATAAATTTGCATCTGAGATGATTGTGACCAGAAGCTTCCCTGTGGGTTCGCTCATCAAAGAAAAGAAAGTTGGAGTTCAGTACCTGCAGCACTTGGAACAATGGCTTCACGAGTGTATTCAGATCCGATCTAGCACTTTTCAGCTGATGAAACTTGCTTTCGATGAAGAAGTTGAACAAGAAGCCATTGAGACATTTCGAAAGAAACTACAGAAAAGACATTTACCAAATACAATATTCGGCTCTTTTGCATTCTGTGGCAAAGGTGTAGCAAGGACGCCAACTTTTGTTATTCAAAAGCACATGGAGAGACACGGGACTCTcaaaaaaacaaagaacaaaCTTGTCAATGCATCAAGGCACAAGACGAGCCAATTAAGGGGTTCACTTCGGAAACGAAAACACCGGCACAACACTGATCCAAACAGTATAGAGGGCCAAAGATCCCCAAGTGGATCGCTTACGACAGATGACGATGACTCTGTTTTGGAACTAAATGATATTCCTTTCAAAATGGAGCCTGCTGTTGTTCAGGGTGTGGAGAGACTGAGTAAGCTGTCCTACTGTGGTGACTATTCACGTCTTAGGTTAGGAAACATTGCTAAGGATTCATCAGTCGGTCCTTGGAGAATATGCATGGTGAATGTCACATACACGGCATGTCGAAGTTACCCTTCAGTGGTGGTAGTCCCACAGAGTATTTCAGATGATAGCATTCTAAGAATAGCTAAGAATCACAGGCAAGGAAGATTCCCTGTGGCAGTGTGGAGACATCAGCGCAACAAAGCAACATTACTCAGAGCAGGTGGCATTGAGAGAAGCACAATTGGATCAATTATGAGACAGAGGGGTGGAGGCAATGTGGCACCTCATGCCATATCTTCATCAGCTTCTGTTGAACAGGAGAAATATTTGGCTGCAGTAGTTGCAGCTACACCTCTTGGCAAAAACAAGAACATTGCACGTGCCAACTCACTCCACCATGGGGTAATTCTGCGAGACGAATTTTTAACAGATCAGGTTGATGCTGGTCAATCTGGTCAACTTGTTGACAAGACTATTATGAAGAAGGGTTGGGAACCTGCGGCACTATACATCTTTGGCGACAAGTCATTATTAAGGAATGTTAAGCAAGAGGCATATCCCAAGTGTGAGTTTGTTCCTATTGAGCTTCCTGATATCAGAGCTGTGAGAGCAAGTTTTAAAAAGTTCCAGCGTGCAACTTGTCCCAGTACAGAGACAAACTTGAGTTTCATTCAGCAAGTCGAGGAGTCTGAATGGCTTCAACAACTATCTGCTATCATGACAGTAGCAAACTGTTTCATTGACCTCATTGACATCCAAGGATCATCAGTCCTTGTGTGTTTTGAAGATGGCTGGGATGCTACTGCACAGGTGCTGTCCCTAGCAGAACTCATGCTTGACCCTCACTATCGTACGATAGATGGTTTTAAACTGTTGATTGAAAAGGAATGGCTCTCATTTGGGCACAGATTCACACACCGTGGAAATCAAATTGCTTCAGCACAGGCTGGATTCACAGCAATATTCTTGCAGTTTCTGGACTGCGTGCATCAGGTATTTTTCTTGTTCAAGTGA

Transcript

BRAKERTYJT00000017935

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03456 all species →	uDENN	uDENN domain	Domain	Interproscan
PF06602 all species →	Myotub-related	Myotubularin-like phosphatase domain	Domain	Interproscan
PF02893 all species →	GRAM	GRAM domain	Domain	Interproscan
PF12335 all species →	SBF2	Myotubularin protein	Family	Interproscan
PF02141 all species →	DENN	DENN (AEX-3) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005113 all species →	Domain	uDENN domain	Interproscan
IPR004182 all species →	Domain	GRAM domain	Interproscan
IPR001194 all species →	Domain	cDENN domain	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR010569 all species →	Domain	Myotubularin-like, phosphatase domain	Interproscan
IPR043153 all species →	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR022096 all species →	Domain	SBF1/SBF2 domain	Interproscan
IPR005112 all species →	Domain	dDENN domain	Interproscan
IPR037516 all species →	Domain	Tripartite DENN domain	Interproscan
IPR030564 all species →	Family	Myotubularin family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10807 all species →	MYOTUBULARIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERTYJP00000017935.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.