Gene detail

Detailed information of BRAKERTYJP00000017950.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000017950

ATGGGTGAGATCGGAATAATGGTTTCGCGGTTGCAGCAGGAAGGGTTCGATTTGGAAGACATGATAGACGAGGAATTGAGGGCAGCAGGCTTTTTGGAGCTTTGTGAACGGACCACAAGAACTCTTTTTCAGAGAGCAGTGGCTGTTGAAGAAAGTCATTCCTCTTTAAGAAGGCTGCTGGACTCCATTGATTCACAGCTGAAGGAGTTTGAAGGAAATCTAGGTAGAGTTGCAACAAAGGAAAGAAGCCCTGGTTTACCAGGAAAAGACAGCAGTGAAGTTCCTGCGGCCAGCAAAGATCAACAAGACAAACCGGAATCCAAGCTAGcaacagttattattattgacGATGATGAGCCGCAATATGTCGATGTTGCCGACATGTCATGCCAAGCGACTTTTGAGGACATTGAAAGTGAAACTCTGGGCAAccaagaaaaggaaaaagacaagacacaaacacaaacacaaacaacaaatTCAGACATTTCATCAAATAACCTACCAGTCAAACCTGCTATAGCAGTTGGGTCAACACAACAGTCAGGCATATTGCCGACTGCAACATTGTCAAAAGCTACATCCACTATAAGTAAACAATCAGATATTGCCCTGTCTTCTGTAAGTAGTGCGGGAAAGGCTCCACCTGTGATTTATAGAACGTTGAAATCACCCGTCACAAGTGGTGCACCATTGTTACCACAACGTGTAGCTCTCAAGTCATCGCCACCTTCTCTTCCTGTTCAACAAACAGTATCGAGTGACAAGTCTTCAAGTAGAACTGCTTCTTCAGTTGTGTCCCCTAGCGAAGTCAGGTCAAGCAGCACACCTTCCATTACTCATCCATCCAAACCAACACTCTCACCTCAAGCTGGACCATCATCAGCTGACAGTAAACCTGACCTCGATAAAGACAAGgcTCCCCCATTAGGGCCCCCTAAGTTTGAGATTGGAACTCGAGTCATAGGTCAGAGGTCAGATGAGCTGTGGTATCCAGGTATGATAGAAAAGGTATTGCCAGATAAAAACAATCAGCAGAAGGTTAAGTACAAGGTAAAGTTTGACAAAGGAACAAGAGGCCTTCTGTCATCTAACCACATCTCATTGGAATCAAACCCACATCCCTTGTGGCTGAATGTGGGTAGCCGTGTTGTAGCATTAAGACCTAGGGACACAGCTGAAGAGAATGCATCTTGGCGGAAACCTTCCACAGGAATATATGGCAAGCTAGATGTGCTGTATGCTGGAATCGTTGCAGAGAATGCTTGTGCTGAAAACAAGCACAggtttcttgttttctttgatGATGGATTTGCTCAATATCTGCCAGTCAAAAAGCTTCATCATGTTTACCACACAGGCAAGAAAGTCTGGGATGAGGTAGCTGAACACTCCAAAGAGTTTATACAGGAATATCTTGAGGAATTCCCCAATcGTCCAATGGTGAAACTCAAAGGAAATCAGTGGGTGAAAACTGAATGGAGAGGCCAATGGTTGAAAGCAAAAGTCATGCAGCTGGACTGCAGTTTGGTTAAGATGTTGTTCCAGATTGATAATCGTTCTGAATGGCTTTACAGAGGATCAACTCGATTGGAGCCTCTCTACAGTGCATTGGTCGATGGTAAGATATCCACTGCTAGAAAGAAGAGGTCTCGTAAGCTCACACGAGGTGCTTCAGGAAAAACTCCAGAACCGTTCATTGACTACAGCATCACCAAGCCATGTCTTGGTATTTCACCATACAGCAAAACAGATCCTAAAGGTGAACAGCAGCGGAAGTTGGAGGAAAAACGACAACAAACACAGCATGAACAACAACGGCAGCAAGAGCAACAAGAACAGATGAGagatgaaaataaaaagatGTCTGTCACCATTGTGTCAACTGCTGCAGTGTCCGCCTCACCTTCAGACAGCAGTCATTCAACGTCCACCACTTCAACTGTAACTGCGTCGTCTACCAGCCTCACACCTGGGCCTGTCAGGACATTGTCAAGAGATGCAGGCCTTGTGCCTAAGAGTACAAGTGACTCTTCTGTATCCAGGTCAGAAAATTTTGAAGCCAGTGGTAAAAGTAATGCAGGCTTGAGCAATGGAAATGGTTCTGGAACTCAGGCATCAGGTTCATTTCAGTCCAACTCTATGAAACAGCTCTCCACCTCAACTGAAAAGGCTTCTCAATTAACAACTGGATGCACAGGCAGTCACTGCTCAGCACCTACTGCGCAGGGTAGTGGGCGTGTCAACAAATGCGACAAGGCAGGATGTAATGGATGTGGTAGTTGTACTGACAGCTCCATGTCAGTTATTCAGGCCAGTACGGCAAGGAAAAATGCTAATGCGGGCTTAGTCATCACCAAAGATCCTTTCCAACGACATAATGGCATTGAAGTTATTGACCTGGATGGAGATGGTACAATGCTTAGTGTTCCAATTGAGTCAGACCATGTTATGAATTCATTGACATCACACAAGAATGATTACCTAGTTCCTAACACGGATGGTTCAATACTGGATGATCTTTATAATGCTTGGGAAGCACCATGGCTCCGCATGAATCGACGAGATGCAAGAAGCACCGGCAGCAATAGGATCCCAGCCTTCCACATCCCTACCAACAACCGGCGCAAGCAGGATGTCGCATCATTGATCCAAGAGAGGCTGAATCAAAGTGAATGGGACAAGAGGATTGCAGGAGAGTGTGAATTTCCCGAGTATCCTGTGGTTTCGAGCAAGCCTGCGCATAAAGGGCCTCATAAATGCAGCACTCTGTGCAATACAAACCTAAGTATTCCAGCTGAGGAAAGCGTGAAACATAATCCCAGAGCAATTCCTCTTTTACTCAAGTGGAAAAGaGAAATTGCACAGCGTCACCCTGGCAACAAGAAGACGGTATATTACCGAACACCATGCAATAAAAGGCTGAGGTTCATGTTGGAGCTTGCGAGTTACTTGACCGTCACTGGTGCTACGAATGTGTCCATAGATCAGTTTTCATTTGACCCAGACATTTCTTGCCAAGATACTGTGTTTAGAGATGTGGATCCCATTTGTCCTGACATATCTCAAGGTGCAGAAAGTGTTAAAATCTCGGTTGTCAATGAAGTGGACACGCATTTTCCGCCGCCAATCGATTACGTATCCAGAAGGATTCTAGCTGAAGGAGTCAACATGGTTCTAGACCCAGGCTTCCTGGCTTGCTGTGACTGTACGGACAATTGTCAGGACAAGTCCAAGTGCTCATGCGCCCAGTTAACCATCCAAGCATCTGCTGCAGTAGGAGGGAAAGAGGATGGAAGAATTGGATATGAGTTCCGCAAGCTCAAGGATGGTGTGCAAACAGGTATCTACGAGTGTAATCAGAACTGCGCATGTGGAACGCAGTGTTTCAACCGAGTTGTGCAGAATGGTATTCAGCTGCGATTACAAGTGTTCAAAACGGAAAACAGGGGATGGGGTCTTCGGTGTCTGGACGACATTCCGATGGGCACATTTGTCTGTACATATGCGGGACAGATTCTTAACGAAGACATGGCTAACAAGGAGGGAAGGGATTTTGGAGATGAGTATTTAGCGGAGTTAGATCACATTGAGGTAGTCGAAAAAGCTAAAGAAGGGTATGAGTCTAATGTGTCGGACCTGGAGGAAGATGACAGTGTGATATATCAGACGCTGGGCGGAGAGAGTACCACTACTGCAAGTGGTTCGGATAATAGCGGCGAAAGTTCTTTATCAGAAGATGAATCTTCCGAAGCTGACTCTTTGTTCAGTGAAGATAGTTTTAGCTCTGGAAGAAATTCAAGACACGGTGACAGCGAGAATACCAACCACAAGGCATCCAGAAGGAAGAAACGAAAGaGGTCGTCGaggaaaactgaaaagaaaagacgGGGTGTACAAGGAGATGAAACTCTGATGGTTGAACGTGAATCCAAAGCTCACTGTTTGTCTAACTTGGCAGATGAGAAATGGTGTTACATAGCTTTAAAGCGTAACCGCGACAACCAAAAAGAAGCAGCTGCCTTTTTGAAAAAGATGATGAAGGGTGAAGTGACTGCTCAGAGTGTATCGGACAATATCGTAAATAACAAGAATGCTGAAGAAAAACCAGATGAGCAGAGTCTGAAAGATGCAGCAAAAGCTGAGCAAGAGAAAGGTATTAACATCTGA

Transcript

BRAKERTYJT00000017950

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18359 all species →	Tudor_5	Histone methyltransferase Tudor domain 1	Domain	Interproscan
PF18358 all species →	Tudor_4	Histone methyltransferase Tudor domain	Domain	Interproscan
PF01429 all species →	MBD	Methyl-CpG binding domain	Domain	Interproscan
PF05033 all species →	Pre-SET	Pre-SET motif	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016177 all species →	Homologous_superfamily	DNA-binding domain superfamily	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR041291 all species →	Domain	Histone methyltransferase, Tudor domain 1	Interproscan
IPR007728 all species →	Domain	Pre-SET domain	Interproscan
IPR041292 all species →	Domain	Histone methyltransferase, Tudor domain 2	Interproscan
IPR001739 all species →	Domain	Methyl-CpG DNA binding	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR051516 all species →	Family	Histone-lysine N-methyltransferase SETDB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46024 all species →	HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan
GO:0010629 all species →	Biological Process	negative regulation of gene expression	Interproscan
GO:0046974 all species →	Molecular Function	histone H3K9 methyltransferase activity	Interproscan
GO:0051567 all species →	Biological Process	obsolete histone H3-K9 methylation	Interproscan
GO:0070828 all species →	Biological Process	heterochromatin organization	Interproscan
GO:0090309 all species →	Biological Process	obsolete positive regulation of DNA methylation-dependent heterochromatin formation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERTYJP00000017950.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.