Gene detail

Detailed information of BRAKERTYJP00000023955.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000023955

ATGTCGTTTGGTGCAGAATGTTTTCTGGATTGTGAGCGAAACGGATTCAAGGGACAGATCAAACAAACATGGCAAGATTTTGTTGTTACTGAAATTGATAGCCAAGGGAAACTGGTGGAACTGATCCCTGGCAAAATTGTTTCTGTAAAAAAAGAAGAACAAAATGATCAGCAAATTGACAGGAACAAAAATCATCTTGAGCAAAAGAGGAGTGGGAAAAAGTCAGAACGAAAGAGTTTAGATGAAAAGGCATTTTTAACACAGACTTCAGAGTCATTTGAAGTGTTAAAAGATCTGGCTATGAAGGACATGGAGAAATGCATGAGCATTGCAAAACTGAAAGAACTTGCAGAGTTGGCTTTGTTTGTTGAGGCTAACAGAGAGAGTGAAAAGAAGATCTGCATTGGTTCTGGGCTGACAAAGGAGCAGCGCACTTGCCTTCATAGAAATATCCGTTTGGCTTTTCCTCATCTTCAGACTGAGACTATACGATCTGATCAGGAGGGAGAGCCTCCTCTAATATTTGCTGGTAATGATAAAGTCTATTGGGAGTTTAGTGACTTATTGAATGACAGGCAACAAGTAGACAGGTTACTATGCTTTGCCCACTGGGAAAATAGAAGAATACCTTCAACACTTAACATTGATGTCAGCAGTGCAGATAAACAGCAGCGAACGAAGATTCACAGACTATTATCCAAACACTTTGGATCATTTCTAGAAAGTAAAACATTTAATCAGTTGGATGGTAAACTGGCAGCAAATGTTGGACAAAGTTATATTCAGATAAGAATGAGAACCAAGGGAGCAAAATCACCTTGCCGACAAAACAACAAACCGGATAATCAAAGACAGATTGATGATGAATACACTGGATTTGTGCTGTGTAAAAGAAATATGGAAACACTGGAAGTTATTCAGCGTTTGTCAACTTGTTTAAGCATCCAGCCTTCAGCCTTCAGTTATGCTGGTATCAAGGACAAGAAAGCAGTTACCAAGCAGTACATGGTGGTTAGAGGTGTCACTCCTGAGCAGATGTGTGCTATTGAAGGACACCCCTCCCTGGAAGGGATAGAATGTGGTAGCTACAGGAAGGGTGTGAAAACACCACTTAGGATGGGCGCGCTGAGTGGAAACCATTTTCAAGTTGTGATCAGAAATATGCAATGTAACAACAGCCATGAAAAGAACTTTGAAGAATGCAAGAAAAATATTGAGGATGCAACGTCTTTCTTGTCTCATCATGGATTCTTGAATTACTTTGGACCTCAGAGGTTTGGTTTGGACGACAAAGAAATTCAGGCTGTCAAGCTGCTTATGACTCCATCAGAATATAACCCGGACCATCCTGTCAACGCTGCCAAAAGGTACTACTGCGAGACGGGTGACGTGCAAGGTACCCTAGGTAAAATGCCTGGTTATAAAGTCCGTGAAACACTTGTTCTCAAAGCTCTTCACAGACATGGCACTGACATGGATGGTTGTCGGAAGGCGTTACTGAATATCCCGTATTCCATGCGACTGTTGTACGTTCACAGCTACTGCAGTCTCGTCTGGAATCTCATGGCTTCCTACAGGATACAGCGGTATGGACGGTCAGCGGCTGTTCAAGGAGATTTAATCGTAGATCGATCATCGAGTGCGCATAGCCTTAACAGCGAAGCCGCTGATAGCAATCATGATAGTGATGTTGATTCATGTGGAGTTGAGGGCAGTGGTGTGACACGGAATCACGTGAGATGTatagccaatcacgagcgagaaATGCACCAGTTAAAAGATGTTATTCTGCCCCTACCGGGGTATAATGTCCAATACCCTGCGAATGACGTGGGAGAAACTTACAATAAAAGACTGGAGTCAGACGGATTAaccacaaaaagtttcagACTACGGGGCCTCGGTATGAACTTACCTGGTGCTTACAGAAAGCTTGTAGCGTTCCCATCAGACTTAGCGTGGTGTGTTAAAGACGAGCGTGCGTACACGGGAAATACATCCGCTGGTCACTCTTTCGCACCAAAGGGCTCAAGTATTACAAACGATGGCGCAAAAAGACTGAGGCTTGCAACGAATGATTATTGCAAAGACGACGTAGAACTTTTAGAGCGACTTCCCTCAGAGACGACAGAAGTTACAAAGGAGGGGCTGACAGTCTCTGATAACTGCTGTAACGACATTGAAATTTCGTTTAGCTTGGAGCCATCGTGTTATGCTACGTCATGTATTAGAGAACTTATGAAAAATTAA

Transcript

BRAKERTYJT00000023955

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01142 all species →	TruD	tRNA pseudouridine synthase D (TruD)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042214 all species →	Homologous_superfamily	Pseudouridine synthase, TruD, catalytic domain	Interproscan
IPR001656 all species →	Family	Pseudouridine synthase, TruD	Interproscan
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR011760 all species →	Domain	Pseudouridine synthase, TruD, insertion domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13326 all species →	TRNA PSEUDOURIDINE SYNTHASE D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERTYJP00000023955.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.