Gene detail

Detailed information of BRAKERTYJP00000024977.1 in Cladopsammia gracilis

Genomic Location: JAJGOT010000146.1:319069...361973
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERTYJT00000024977

ATGCAGAAAAGAAGGGAAAGGATAGAAGCATGGAGGGCCCAACGAAAGAAAGAACAGGACAGCAAAGAGCAAAGTGAAGTGGCACAGAAGGAGCagcaaaagaagaaaaaagccTGGAGTCTGGaggatgacgatgatgatgatgaggaggaagaggaggaggatcAAGAAAATGTGCAGGTTAAGGAAGAGGATGCTGAAGATGAaccaaagaataaaacaattaACAATAAAAAAGGTCAATCCAGTGTTACCAATGGTAAAGTAAAGGAAGAACCACAGGATGATGATGTTGATCCATTGGATGCTTTCATGGCTGATGTGAGCAAAGAGGTGAAGAAAATCAATGCTGTGGATCAGAAGAAGAAAGTTGGAAAAGCTGGTAAAACAACTGTAATTACTCATGTTGTCGCCAAACCAAAGAAGAGGGATCCAACCAAAGGTGAATTGATGGAAAATGACCAAGATGCTATGGAGTATTCATCTGAGGAAGATGTGGAAGAGGAGACTATAGAATCAACTTATGCAAACTATAAAACCAAGAAGAAGAAGGATCTGCAAGCAGTTAACCATGACAAAGTTTATTACTCAACCTTTAGAAAGGATTTTTATGTTGAAGTCCCAGAACTTGCAAGAATGACTCCTGAAGAGGTTGAGGAATATCGTGCAAAGCTGGAAAATATTCGCATTCGTGGAAAAGACTATCCTAAACCTGTCAAGACCTGGGCCCAGACAGGAGTCAGCTTAAAACTTCTTGATGTCCTCAAAAAgAATCAATACGAAAAACCTACACCAATTCAAGCTCAAGGCATCCCAACGATCATGAGTGGCAGAGATATGATAGGAATTGCTAAGACAGGTAGTGGAAAAACCTTAGCATTTCTTCTACCCATGTACCGACATGTCCTTGATCAACCTGAGCTTGAGCGAGATGATGGACCAATAGCTATTATAATGACACCAACCAGGGAGTTAGCTCTTCAAATCTACCGCGAATGTAAGAAGTTCTGCAAGCCCCTTGATCTGCGAGTCGTCTGTGTCTATGGCGGCACTGGGATCAGTGAGCAGATTGCAGAACTGAAGCGTGGAGCAGAAATTATTGTTTGCACTCCAGGCAGAATGATAGATATGTTGACAGCAAATAATGGTCGGGTGACAAACTGCCGTCGTTGTACTTACCTTGTGCTGGATGAAGCAGACAGGATGTTTGATATGGGATTTGAACCTCAAGTGATGAGAATAATCGACTGTATCAGACCCGATAAGCAGACCGTCATGTTTTCAGCCACCTTCCCACGTCAGATGGAAACTCTAGCAAGAAAGATCCTCACCAAACCAGTTGAGATACAAGTTGGTGGTCGAAGTATCGTCTGTTCAGATGTGCAACAAAACGTGGTAGTTATTGAGGAGGACGACAAGTTTTTGAAACTTCTTGAGTTGCTTGGTAATTACCAGGAGGAAGGTAGCGTTTTGGTGTTTGTGGAAAAGCAAGAAAAAGCTGACATGTTGTTTAAAGATCTACTAAGAAGGTCCTACCCCTGCTTGTCTCTTCATGGAGGTATGGACCAGTTTGATCGAGACAGCACGATAGCTGACTTCAAGAATGGTGTCACTAACTTAATGaTCGCAACATCTGTTGCTGCTAGAGGTTTGGATGTGAAGCAGTTGATCTTGGTGGTAAATTATGACTGTCCAAACCACTATGAAGATTATGTTCATAGATGTGGACGAACTGGCCGAGCAGGAAGAAAAGGAACTTCATTTACGTTCGTAACTTCCGAGCAAGGAAGGCATGCCGGTGATGTCGTCAAGGCGTTAGAGTCTTCCGAGTCTGAGGTTCCTGATGAACTAAGAAAACTATGGCATGATTATACAGAAGAAAGAAAAGCGGAAGGAAAGAACGTCGTCAAGAACAGCGGATTCACAGGAAAAGGATTCAAGTTCAACGACGAAGAGAGGGCGAAAGTGAATGAAGCGAAAAAGATCCAGAAATGGGCTCTTGGTCTTCAAGACTCGGACGATGAAGCAGAAGCCGAAGAAAAAGCTGTGGAAGAGaTTGACAAGCAGCTGGATGCTGTGTTTAGTAAAGGCAAACCTCACATCAAGAAAGCGGCGCCAACAGTAGCCACCGGCGAACAAATCAAAGGCGAACAACAAGCTAAGCTCAACTTGGCCACAAGTATTGCGGCTAAAATCAACCAGAAGATTATTGCTGGAACAAACaATATGGACCCGACTCAGCAAGCTGCAAGCCAGATCATCAAAGGATCAACGATCACCGCTCTCACTGGTCTGGGTCTAGCCAAACAGCTTGCCGAAAAGATTCATGGAAAGATCGGCTATGAAGCGCCAGTGGAGGAGACAAAACAGGAAGAAAAACAGACAGAAAACGAACAGCGGTACGAAGATGAAGTGGAAATAAACGACTTCCCGCAGACTGCACGCTGGAAAGTCACATCAAAGGAGACAATAATGAACATCACTGAGGTATCGGAAGCGGCCATTACAGTCCGTGGAACTTTCTTTCCTCCAGgCAAAGAACCCAAGGCAGAAGGCGAAAGGAAAATCTATTTATATATCGAAGGTCCTTCTGAACGCTCGATCCATTTAGCGAAAGTCGAAGTGAAGCGAGTCGTCAAGGAAGAGATGATGAGACTGCTCGAAAGTAGAATAATTGAGACCAAGCGAAAAGAGGAAGAGTTGAAGGCAAAATTGGTGGATAAAGTTGACGCCTGGACTCAAACAGATCCTGAAATAACCGGGGTAGATGCTGATGATTTCGAAGAAGAAGGCGATGGCGAAGAAGAGTCGGGATCGGAGAGCAGCGAAGAAGAGGAGGACGAGTTGGGAGAAGATGGCCTGTCCAAGGTTGTCGACAAGGGAACTTCCTCTAAACCAGTGCGACGCAAAATTATTGAGCTGAAGTATTATTTTGGAGAAGATTTACCTGATGCAGAGCTAACCAAACTTGCTCAAGCAGAGGTAATTGTTCCTCCTGGACTTGAAGTAAAAGAATCTAACATTCCAAAGGCTGGCCGTGGAGTCTTTGCAAAGTGTGTAATACCCAAGCATGACTTTTTTGGTCCGTTTGTGGGTAAGAAAATTCCCCCAGAGGAGGCAAAGAGCTATACAGACTCGCTATATATATGGGAGGTGCGAGATGATTATGGTAAACTGATGCACTTGGTTGATGGCCGTGACGCATTTCAATCCAACTGGTTGCGCTATGTGACATGCTGCCGCAGTGCAGCTGATCAGAACATCCGTGCTGTTCAGTACGATGGGAATATTTACTATATGGCCACCAAAGAGATTGCGATTGGAGAAGAACTGTTGGCATTTTACGGAGAAAAATTTGCCCGCATTCTTGGGATTAAAACACCAAAGAAGGGAGCATCTAAAGAgaaagAACCAGTTGATGAAAGTTTTGCCTGCAAAAACTGTGGAAAGATGTACAGTAACCCCGCATCACTGATTGGTCATCTTAAGTACAAGTGCAATACAGGACAGCAAAGGAGCATTTTTGTACCTCAGCCTACTGGTCCACGTGCTGCTATTCCCAAGATCAAGGTGACTGAAGAATATGCCCGCCAACAGAATGAGAAACTGAAGAAGTTCAAGTGCGACGAGTGTGGAAAGGCGTTCATCCGTAACTACACTTTACAGTGCCACAAGCTGATTCACACTGGCATAAAGGAACACAAGTGTGCCGAGTGCGGCAAGGAGTTCACCCTGTTAAAACATCTTCAACGACACCAACTGGTTCACACTGGAGAGAAGCCCTACAAGTGTCACCTTTGTGGCCGTGCATTCTCTCAGCAAGGCAGTCTTCAGGCACACAGCCGCACCCACACTGGAGTGAAGCCTTATTCGTGCAAGATCTGTGGGCGAGCTTTTGCTTTGCAGTCACCATTGCTATCCCACATGAGGACGCACAGTCAAGAAAAGGCCTTCAAGTGTGAAACATGTGGGAAGGCGTTCACACACAGAAACACCCTGTCTAGGCATGAGCTTATCCACACTGGTGTACGTCCATTTAAGTGTGACAAATGTGGGAAGACCTTCACTCAGACCAATGATCTCAAGCGCCACAGTCGCATCCACACTGGTCTGCGCCCTTACAAGTGCCACATCTGTGGCAAGGCCTTCACAGTGGAGTTCACACTGGTTTGTCATATCCGTACTCATACTGGTGTTCGTCCTTACAAATGTGACCACTGCGACAAGACCTTCACCCAGCCTGGTGCTAGACTGAAGCATGCACGAAACAATCATCCAGACAAGCCACTTCCAGGAAAGGAATCAAGTACAACTACCTTGCCAAGTGCCGCCATGTCAACTACTCAAAATGTCGAACAAGAAGTTGAACCTGCTGATGCCGCTAATGGTACTGAAGCTCCTGGGGAGACTGCCGATGATAAAGATCAGAAAGCTAATGGTGATGTGGAGATGCGTTTGGAGTCTAGCTCTGTTGTTGTGGATGTTGAAATCCAGCTGCCCTGTGCAGCCGGCGTTGTACTGTCAGCCTCCTCATGA

Transcript

BRAKERTYJT00000024977

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004813 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF21549 all species →	PRDM2_PR	PR domain zinc finger protein 2, PR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR044417 all species →	Domain	PRDM7/PRDM9, PR/SET domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24031 all species →	RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12811	DDX46, PRP5; ATP-dependent RNA helicase DDX46/PRP5	EC:5.6.2.7	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.