Gene detail

Detailed information of BRAKERTYJP00000025438.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000025438

ATGTTTGGATCTACGACGAATACACCTTTTGGAACAGGTTCTAGCTTTGGAACGGGAACAAGTATACAAGATAGAGAGTTCTTACATGAAAGAATGTGCATGGTTTTCATGAAAATACATGAAGATGTTAACATGGCTAATTTATTCACAGCTTTTGGAAGTCAgaacactggaacacagttTGGCACCAGTTCAGGTCTAGGCTCAAGCCTGTTTGGAAAGCCAACACAGACAGCTTTTGGTAGTACATTTGGCAGTCAGCCTCAAAGTTCAGGTACCACTGGCTTGTTTGGAAACACAGCTACAAGTACAGGAGGCAGTTTATTTGGTGGATCCACAACTGGAAGCATCTTTGGACAGCAGCCCACCACACAATCTTCATTTGGTGGTTTTGGGTCAAGTGGGACTGGTCTTTTTGGCAATACAGCAAAAAGTACCACAGGCACAAGTGTTTTCCAGACACCAGGACAGACCACTGCCTTTGGTACTGGAACATCAACAGGATTTGGAACAACTGGTTCCAGTCTGTTTGGGAACACAGCAAACAAGGGTACCAGTCTGTTTGGAGCCAGTCAACAGACAGGCTCCTCATTGTTTGGACAGAGTACGACCACTTCAGGTTTTCAAGGGTTAGGAACCGCTGGCACTGCAACTACTGGGACACCTGTCAAGTTTACTGTTGTTACAGGGAGTGATCCTTTGGTCAAAAATGGGATTACAACTAACATCAGCATCAGACATCAGTGTATTACAGTCATGCCAACTTATGAAAAGAAGTGTTTAGAGGAGCTGAGAATTGAAGATTATGAAGCTGGACGTAAAACAGGTGCTTCTGCCACAACTGGCTTTTCTGGTTTGTCAACGAGCACAAGTTCAGGAGGTCTGTTTGGAAATACAACAACAGGATTTGGAACAACATCCACCTTTGGACAGAAACCGACAACTGGATTTGGAACAACTGgaagcTTGTTTGGTAATACCACCACACCTTCCCTCTTTggtcaacaacagcaacagcagACAACAGGTTCACTGTTTGGTGGTCAGAAAACAGGAAGTCTGTTTGGCACGCCAACGTCGAGTACAACATCAACAGCGTTTGGCACAAGCTTTGGTACAGGAACAACCACAGGTCTTTTTGGACAGACTTCCACTGGACAAACAACTGGCCTGTTTGGTACACCGACAACGTCTGCATCCACTGGTTTGTTTGGAGCTCAAAACACAGGCTTTGGCCAGACACAAACTGGAACAGGACTGTTCGGACAAACAGGATTTGGACAGACACAACAACAGTCTACACTTTTTGGAGCCAAGCCATTTGGAACAACACTTGGCACTGGGACAACTGGTGGGTTATTTGGTGCACAGAATAAGCCCCAAACAGGATTTAACTTTGGTGCCAGTACTGGTGGCCTGGGAACAAGTGCATTTGGTACTACGGCAGGCACAGGAGGGAGTCTTTTTGGTGCTAAACCCACTGGCTTTGGTACAGGGACGGCGTTTGGTACCAATACAGGCACAGGGCTCTTTGGTAACACAGGGACACTAGGCACAGCAACGGGATTAGGCACAGGGACCCTAGGAACAGGTGCATTTGGTACTCTGGGTACTCAACAAACAGCTGGTCTTGGAATAAGCACCCTCGGAAGTGCCCAAAATACAGCTCTGAATACTTTACAacagcaacagcagcagcagcttCTAGAGCAACAACTTAAAATTCTGGCCAACTCTCCATTTGGGGACTCACCACTCTTCAGGAATTCTTTAGTGGAGAAGGCCAGGACAGAGAGAGCATCAAGTTCTACTTCAAGTTCTGTTCAGAAGATTTCCACCACCCCGTCACATTATAAGGTATCTCCTCGTCCATCAGCCAGAATTAAACCACGACCAATCAATAATCACACCATGAATAAGTCCAAACTGTTTGAAGGGTTGGAGGAAGAATCTGGCTTGAGTCCTGACACATTTGTACCCAGAAAGAACATCAAGAAGCTTGTTATCAAGAGCAAGTCTGTCGCAGAGGATTCACCCTTGTCAATAGTTGACACAACCCGAGTCAAGCTGCACTCCTTGGGAGATGATGACCTGCCAGTGACCAGCTCCCCTTTCCCACCTTCCCCTCCATCATCACATCATGCATCGCCTGTGAGGAGTTCCACCGTTCCTGCGGAGGAGGGGAGGAGTAAGGATGCTGACGACAGGGTTAATACCAGTGAAAGCGCTAGTCCTATTGGTGTGAGGTTCTCGCAGGCTGCAACAAGAGAATCATTGGATACAACCATTACAGACTTAAATGTCCGCCGTGTTACAAGGCGAGATGAGGATCAGGAGAGCTTGAGGAGTTCTGAGCTGGCAGAAGAGGATTTGTCGGAGAGTGCAGCAAGAGAAATGTGTGGTATAACTTTGAAAAGGTCTGAGTACTACACCATACCACCAATAAATGAACTCAACCAGATGACTGACAGCAGTGGAGATGTATTCGTTGACGACTTTGTTGTTGGTCGGGAAGGTTATGGCCAAGTCAAGTTTTACGGTCGTACTAATGTTGCTGGACTTAATTTGGATGAGATTGTGTTCTTCAGGCGCCGTGAGATAGAAGTTTATCCAGACACTTATCCTAACAAACCTCCTGTTGGGGAGAAGCTGAACAAGAAAGCTGAAATCACCCTGGAGAAAGTTTGGCCAAATGACAAGTCTTCGCACAAGCCAATTACAAGTCCAGAAAGACTGAAGCTTCAAGGATGGCAACAGAGAGTGGAAAATGCAACAGCAAAACTTGGAGCAACTTTCCTTGATTATGACCCTGACAATGGAAACtgggtttttactGTGGAGCACTTCACTCGGTATGGAATGCACGAGTATCTTGACGATGAACAGCTGGCAAAAAAGCTGAAAAGACCTCCACTCAAACCACATGTGCAGGATGTTGACGACTCtgtggaaaaagaaaaacttgAAATCTTCAGACATCTTCAAGAAAAGAAACAGCAACTGGAAGCTTATGAGAAGGAGAAGCAAAGAGCTGCTCTGTCCTTACACGACCAGGACAGCGACATGCCAGATATTGATCATGAAACTTTCCCTgAGGAAATGCTTGAAGAAGACGGCAGAGAAGAAAGTGATTCTGATGAAGAAGAACTTGATAACTCACCAGCCAGTCACCAGTTAGCAACAGCGCTAGGAATGAATGCACAGCGCATCCAGGTCATGAAGGCATCATTTTTTGCTGATCAGTCTCAGTTGTCATCAGTGCACTTACCCAAGGATGGTCCTTCTGTTGACAAATCCCTTCTGAGTGCATCATTTAGTAAAGCAGGTCATTCTAAGAGTTCTGTGTATCCTGCTGTCATGCCGCTAGGGCCGTTGCTATCTCCTAAGGTCCAGCGCTGTGTGGATGAGTCAGGTGGACCAGGGCAGTTGTCGCAGTCATTGTTTGGCAGCCCAAAGATAGGAGTGTATCCTCTGAGACACCCTGTGGTACATGACATGACTCCAGCAGCCCCGCCCTCGCCAATGCTGCTTCCAACTGCTATTGGTACTGCAATGGACATTGGAATTAAAGTGGTGGGTGCGCGCAGTCAGTTTGGCTTGGTCCCTAAAGAGGACTCCCTAGTCAACCTAAAGGAGAACCTTGTGGGTGATGCTGGCCTGATGATGGGACGCTCCTTTCGTGTTGGCTGGGGGCCAGGGTTCGTCTTGGTACACAGTGGTACTCCTCTGGGAAAACAAGTGAAGCAGCCCACAGCTCCCAGCACTCAGTCCTCCTTTGTGGGGGATTTCTTGGCTCCAAAGCCAAAGCCGAGCAGCAGTGAGGGAGCACCAGCATTTGGTGTGACACTGGAGAAGCTTAATGTCGCTTCACATTTCAGTCACGGCAGTGATACTGTGCTGGCACAGCATCAGTCCGTGCTTGAAGCAGAATTACACCATGCCTCGGTGTCTGTTGAAGATGGCTGTCCATTCTTTCGACCCTCAACTAATGTTAAAGCTTTACATCATCATGCTGAAGTGGCCAGGAGGAACAAGGAAGCCATAGATTCAGGTCCACTAAGAGAAGCAACAGAACAGATCTGTTTAGTTTGGGAATTAGTTGTTGCTCTTTGGGGCAAACTGAAAGATCAAGAAGACGAAGAAGGTTTGCTCAGCACTGCAGATGACCGGAAAGCATATCAGAATCGTGTTGCCAGAAAAGCAGCTTTGTCAAATTGGTTGGCTGAGGCTGCAAAAACAAGAATCTCCCGAGAAGTAGATGAAGCTAATTTTCAGGAAAGTGATCACTTGAAGTCTATCTTCAGTTATTTGACGGGAAAGCAGATTAGCAACGCATGCCATGCGGCCCAACAACATGGCGACTATCGACTGTCACTTCTGTTGTCACAAGTTACAGGAAACTCCGTGACAAGAAATCTCATCTACAAACAGCTGAGCGACTGGCAAGAAATGAAGGCGGACGTGTTCATCAATGAAGAGAGAATAAAAATCTTCGCTCTGCTTGCGGGAACAATGGTATGGCCCATGTCACGTGACACCACTCGTCTTCAAACCGCAACAAGTGATGTGGTGAATGTCTGCGAAGGACTGGATTGGAAAAGAGTTCTTGCGGTTCATTTGTGGTATCACTGTACGCCAACATCTTCAATACAAGATGCTTTGAATGCGTATGAAATTTCTTTCAAGGGAAGCTCGAGCAATGGAAAGTATGGCGCTGCTCCTGAGCCACCGTTTATGGAAGAAAATGACGAGGATGAAGATGACGAAAACAAGTTTGTGACGCGCGATACTTGTTATCATCTGTTAAAACTTTACTGCAAACGATCTCACAGACTGGAGCGGCTGTTGTCACCATCAACTTCCACTGCCTATCAGCTGGATTTTAGCTTAAGCTGGCATCTGTACCAGGTCCTTCAATCCCTTGAGTACACGCATCTTTCCGAGACCCAGGCGGGTATGTTACACAGTGGCTTTGCTGCTCAGCTGGAGGGACTGGGCCTATGGCACTGGGCTGCATTCGTGTTGTTACATATTCAAGACTCAGTGAAACGAGAGGACGCTGTCCGCAATCTTCTGTGTCGCTACTGCTGTTTGTCAGCGGATCATGGGAATGTGGAGAAAGAGCGCTTCATGTTAGACGATTTGAAAATTCCTGCTGAGTGGATACACGAGGCCAAGGCTTTGCGGGCGCGCTATGAAGGCCGAACACGCGAGGAAGCTTTTCACCTCGTCAAAGCACGTCATTGGAGTCTGGGACATAATGTTGTCCTGCGCAGCCTCGTTAGTGATGCAATCATAAATGGGGAGTACGACATATTGAAAACGTTGCTTGGAGAATTGGAACCGAGGGATCGTAGCTCCACCGTGAAGGACTGGGCGACAGGAGGACAGgTATTTTTAGATTATCTCGCGCTTGTAGAAAAGTTCCAAGACATCGCAAAGGGCAAACTCGTACCAACCAAGTATGATCTAGAAGATATTCACGCGGAGGTGTCTTCCCTTTGCACGAGAATCAACAGCTTGCCGTCCGACACAACCAAGGACTTGTTATGCCAATACGACatggctaaaatgtgtgcaaatTTCATGAAAATTGTTATGAAAGAACTGACGGACCTCACAGATGAAGGGGAGGCTCTTTTACCAACTCACATCTTAGCCCCTCATGTGACAAGGCTACCGATGCCCGAGGACTGTGCACTAGCCGAACTGCGTCAACTGATTCCAAGCTACATCACGGAAATAACCGCTGGCCATTAA

Transcript

BRAKERTYJT00000025438

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21240 all species →	Nup98_GLEBS	Nup98, Gle2-binding sequence	Domain	Interproscan
PF04096 all species →	Nucleoporin2	Nucleoporin autopeptidase	Family	Interproscan
PF12110 all species →	Nup96	Nuclear protein 96	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007230 all species →	Domain	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain	Interproscan
IPR037665 all species →	Family	Nucleoporin peptidase S59-like	Interproscan
IPR036903 all species →	Homologous_superfamily	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamily	Interproscan
IPR021967 all species →	Domain	Nuclear pore complex protein NUP96, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23198 all species →	NUCLEOPORIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0000973 all species →	Biological Process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0034398 all species →	Biological Process	telomere tethering at nuclear periphery	Interproscan
GO:0044614 all species →	Cellular Component	nuclear pore cytoplasmic filaments	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14297	NUP98, ADAR2, NUP116; nuclear pore complex protein Nup98-Nup96	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.