Gene detail

Detailed information of BRAKERTYJP00000029612.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation CGRAC2 · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000029612

atggcggaatcGGATGAAGAAGTTGATGTTGAGGACATTTCCGATAGCGAACAAATATCCAATTTGCGAGACTTGGCAGAAGAAGATCAGAAAGACAATtgGTACGATAAAGACATGAGCAATCACAATTTTTTAAACTCTTCAAGCAGCCCATTTTCGTCTGATTATTGTGATCCGCATTCGTGGCTTCTAGACACAAACACGGTTTGGTCACTGGATTCTTGCACTGATGACAAAAGTAGAGCAACTATTGAAAAAATGATTCTAGAAGAACAAATGTATGCATACAGAGCAGTGTCAACAAAACTGCAGAAGCCATCAACAGAGACTGACAAGAGGAAACAACCTCCCGTTGGAAGGGAACCGTCCATAACTCACAGAAAACCCTGGACCATAGAGGAGCAGGAGCTGTTTGAACAGGGATTGGGTCTATATGGACGAAGCTGGACAAAAATAGCAAACATGATTGACACTCGAACAGCTCTCCAAGTTAAAAACTACGCCAAACAGTACTTCAAACAAAAGAACAAGAACCTTGTGAAATCTGAAGTACATGAAACCCAAGAAATACAGGAACAATGCGATGAAACATTTGTGCTTGCCAATGTCGAAGAAGTGGTTAAGGATAATGGTTTATCAAAAGATGAACAAACTGAGCAGTGCAGAGAAGTTTCCTTTAGTGCCAAAGAAAAACCTGAGTGTGAAGAATCAGACGAAGATATTGAAGTAGATATTGATGGGTCAGACAACGAAGAAGTAGATAACATCTTAATCCCAGgCCAAACTACTTCATGTCCTGAGGCTGTTTATTCAGCTCTTGTCCAAGCAGCAGCAACAGAGGAAAATCCCCAGGATTCAGTAATAGAAACGAGCACTTTTACCAGTTCAGAAGTGAACCATGCCTCTGTTGTTTTCGACAACAGTCTTCCCATCAACGAAGAGGAGGTGGAAACTCATTCATCTCCGTGTGGTATTAGCACAGAGACCGCCTCGCCAGAGGAATGCAAATTTGAAGTAGAAACAAACAGTGTTATGAACGACACGGGTAGATTAAGTGTTTTTAACAATGGACAAGATAATTTGAAGCAAGATTGCGACGAAAGCTTTTCTCCTGAGTTTCATTATGAATGTAACAGACATGACAGTATGATAAACATTGCTGATGATAGTAACAGCTCACAACTGCCGAATGCGAGTCACGCTGTAGAAACGTCACGCGATATGATGCAGCGGGAATGTCACACTGCATCAATTGTAAAAACTGTTGAGGATCATCTAAACGCAGACAATTTCTATTTTGATTTAAATGACTTTGATTCTCAATGCGCTAATAACAGTGCTCTTGAGAAGGACTGGGCTCCAGTCACGTGTGGTGAAGTAACATGCGCAGAGCTCATACAACCTTCCGACCGCGAGCAGCCTGGGGAAAACATTGAAAACTCTAGCGCGCTTTACAATCAAGTTGTTATCGACAGGAATGTTATTCAAGATGTCGAAAAAGAACACAATGCCGAATTTTTCATGGGAAGAGCTCTTAAAACCCCAGAGAGATACATGAAAATTCGCAACTATATTCTCGACATGTGGGAGAAGACCAAACCAAGCTACCTTTTTAAAACAGCAGCAAGAGGCGGGCTTCGAAATTGCGGCGATGTGAACTCTATTGGGAGGGTACACGCTTTCTTAGAAGACATTGGAGCTATAAACGAGGGATGCCTTGATAGACCAGTCCCCCGGGTCAGACAACAAGGAGAGGTTACAGATGCTAAAGAAAATGTCCACATGGAATCCTGGGTAAATTCACTGAGACCAAGAAAGAAGCGGCCGAGGAATGAGGATGGGGACTTGGTCGACTTCAGTACTCCAGAGGGTATGACCATACAGCACTTGTCCCCAGACGAACAACTTCCATCAGAAGGGGCTTCAAATGACAAGGGCTCTCCAGCACCCCCCAGAAAAAGACCCTCACGAAACAAGCCCTCGTACGATCCGTTCCTCTTGGTTCCTTGCCGCAAATTTCTCTCTGCGAGTGCGGTGCCTTTTGATGTTGTTATCCAATCAGAAACCTTGGTGGTTATGGACACGCATGCGCATATGTCGACTACTGAGGTGATTGGTCTTTTAGGAGGAAACTACTTGCATGACTCAAGGATATTGAAGGTTTCCAAGGCAATACCTTGTAGGAGCTTAAGCACTGGGTTACAGTGTGAAATGGACCCTGTATCTCAGACCCAGGCTTCGGAAGAATTGGCACATGGAGGACTGGCGGTGGTGGGCTGGTACCACTCTCATCCTACATTCGCCCCCATACCTTCCATACGTGATATTGAAACTCAAGCGAAATTCCAGGAATGGTTTGGAAAAGGAGGAGCACCATTTGTTGGCGTTATTGTCAGTCCGTACAATTATAGCAACCCTTCTAGCCAATCACAGATCAGATGCTTGACAGTAAGCGATGAGTGGGAGTCCGCTGGCCAGTACAGATTGCCTTACCAGTTTGACTTTGAAGTGTACGAAGTCGAGGCTGATGAGGATGACACAGTGGAACAAGTGAGAAGCATAGCTGACGATTACCGCACATATCCCTTtCGTGTTCAACTAAACAGACGATTTGGGTCTTCTTCTGACTTCGACCTCTTGGACAAACTTTTGGACTCACTTCGAGCTCGAGTAACAAGCAACTGTGACGGTAAAAGAGAGGCGTTCCTGGACAGAATAAAGAACACAATCGCTGAAAACATCAAGCCTCGTCTGCCATTCCAGCAGAGCGAGTAG

Transcript

BRAKERTYJT00000029612

Protein

Gene family

Family type	Membership / link
Transcription factor family	MYB · all TF in this species
Ubiquitin family	UBD\|Other\|Jab_MPN · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF01398 all species →	JAB	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	Family	Interproscan
PF04433 all species →	SWIRM	SWIRM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR000555 all species →	Domain	JAB1/MPN/MOV34 metalloenzyme domain	Interproscan
IPR037518 all species →	Domain	MPN domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR050242 all species →	Family	JAMM/MPN+ metalloenzymes, peptidase M67A	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR007526 all species →	Domain	SWIRM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10410 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11865	MYSM1; histone H2A deubiquitinase	EC:3.4.19.-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.