Detailed information of BRAKERTYJP00000031348.1 in Cladopsammia gracilis

Genomic Location: JAJGOT010000204.1:725131...733146
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005181 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for BRAKERTYJP00000031348.1 in Cladopsammia gracilis.
 InterPro
InterPro termTypeDescriptionSource
IPR045075
all species →		FamilyPre-mRNA-splicing factor Syf1-likeInterproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR003107
all species →		RepeatHAT (Half-A-TPR) repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11246
all species →		PRE-MRNA SPLICING FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000349
all species →		Biological Processgeneration of catalytic spliceosome for first transesterification stepInterproscan
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000974
all species →		Cellular ComponentPrp19 complexInterproscan
GO:0071007
all species →		Cellular ComponentU2-type catalytic step 2 spliceosomeInterproscan
GO:0071014
all species →		Cellular Componentpost-mRNA release spliceosomal complexInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0006396
all species →		Biological ProcessRNA processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12867SYF1, XAB2; pre-mRNA-splicing factor SYF1-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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