Gene detail

Detailed information of BRAKERTYJP00000033734.1 in Cladopsammia gracilis

Genomic Location: JAJGOT010000229.1:269221...340637
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERTYJT00000033734

ATGTCTCTCACGTCCACCCAATCGTACGAAGCACCTGTATCTCTTACACAGGAGTCAATCGACGAGATTGTGTGGTGGAGAGATCAACTGAGTGCCTGGAATGGGAAAGCTCTCTTTCTTCAACCAATAGACTTAGTGATCGAGACAGATGCATCTCGCCAGGGTTGGGGAGCTTATTGCGAGGGAATACGATCAGGAGGTCCCTGGGTCTTGCACGAGCAAAGACTTCATATAAATTGTCTAGAACTCCTCGCCGGTTCATTTGCTCTCAAGTCCTTCACACGAGACAAAGCCTGTGTTCATGTTCATCTCTTGATGGACAATGTTTCAGCTGTCTCTTACATAAACAAGATGGGAGGCACCCACTCTCGCCTTCTTTCCAACCTAGCAATAAGTCTTTGGGAGTGGTGTCTAGAACATCATCTAGTAATCTCAGCTCAACACCTACCCGGGGTCCTGAACTCAAGAGCAGACAGAGAGTCGAGGACTATGATAGATTCCAGCGACTGGAAACTGAAACATTCAATTTTCCAGACTCTTTTAAACCTTTGGGGCCCATTCAGGGTGGATCTGTTTGCCTCTCGTCTGACCTCCCAACTTCCTCAGTTTGCCAGTTGGAGACCAGATCCCCTAGCAACTTACACAGATGCCTTCTCCCTCAACTGGAAGGGTCTTCAGGGTTATGCATTTCCCCCATTTGCCCTGATAGGTCGTGTCTTGCAACAAATTCTGAGCCAGGAGGTGGACCAACTTGTACTAGTGGCCCCAGTTTGGCCATCTCAACCTTGGTACCCACTGCTGTTGAGTCGTGCAGTAGATCTTCCCCTACTCCTTCCTATTACCCCAGATCTACTCACCAGGGAGGGTCACACACATCCACTCCCCAACCTTCAGTTAGCTGGCTCCAGACAGATCTTCAGACTTGGCCAAGAGGGATTTGagatttcgtttttttttcatccagAGGGAGTGTCTTTTAAACTACCTGAGCTCTCTAAGACCTCTCGCCCAGGGCAAAACCCGAAATTAAGTTTTCATGCTAGTTTACTTGAAGACCTGGAGTTGTGCCCAGTAGCATGTCTTAGAGAGTACGAAAGTCGCACTAAGAGTTACAGACCTGAAAACTCATCTGTACCAGACAAGCTTTTCTTGTCATACATTCATCCCCATAAACCAGTAACCTCTTCTACCTTGGCTAGATGGATCAAGTTTGCTTTGAAGGAGTCAGGCATTGATACATCTATGTTCACTGCCCACTCAGTTCGGTCTGCTGCCACTTCAGAGGCAGCAAATCAAGGTATTTCAGTATCTGAAATTCTGTCTATGGCTGACTGGACTCAAGAGAGTACTTTTGTGAAGTTTTATTATCGTCCCAAGGTTACTTCCAATGCAGGAAGAGCTGTTTTATCGGGTATTTCTTCAGAGGGTAAGGGAGATGGCAGTCGACTCGGTCATGTCACTGAAGACCATGTCCGCTATCCCAAAATGATTGAAGCATTCTCTAGCAAAAAGGTAGTTGATGTTGCTGTAGGTTCAGTTCACTGCCTGGTGGCAACAGAGGATGGTGAAGTGTACAGCTGGGGCAAGAATGAACAAGGACAGCTGGGTGACACCTCAAACATTGCCAGAGCAGAACCCACTCTTATAGTATCTTTGGACAGCAAGGAGATAACTGGGGTAGCCTGTGGACCTGCACAGAGTTTTGCATGGTCATCTGCCGGTCACTGGAGTGTGGGGCTGCGGCTTCCTTTCTGCCTTGATGTGTGCAAGAAGACATTTGAGCATCTTGATGCACTGCTGCGGCGTGTGAGTGAGGACCTAACAGGGGCATTGGATTGGCCTCCTCCCCCACAAGAAAAGGAATGTATCGCTGTGGCAACATTAAACCTGCTTAGACTTCAGCTCCATGCAGCCATTACTGGCAATGTAGATGCAGATGATATAGGTCTTGGAGTAGGAAGCAAGCTGCTTCAGTCACTCAAACAACAGGTGGTTACACTAGCCAGCAACAAAGGAGTGTTAAAGACAGTGCAGTGTGCAGCTCAAGGGGCACTGAGAAATGGCTGGGTCCTGCTACTGCCAACACCAGAGGAGCGAGCCAGGGCTTTAACAGAACTACTTATTGAAACTTGCGACAAACCAACATCTTCCCCAGCTGGGAAAAAGTTCATGTCAGACCTGCTCATCAGCAGCTTAATGGCAGAAGGGAGTCTGGAATCAGCCCTTGAGACAGCTATTGACAATGAAGTCAAAGAGGGTGCAGGAGAAAATGACAAGGAGAAAACTTCCGAGAGCAAGGACAAAATTGTTGATGTACCTCTTATTCATCTAACCCAGCAGTTGCTGAAGACTTCTTCCACACAGGTTTTAAGTGAATTTCAGCAGTTATTTTTGAAGCCACCGATTCTTCAGTGGCCTTACATGCCCCCGCCCCGCCCTATGACTGTGGAGTTGCTGTTGAAGTTACAGAGGCTTCTTATTGGGAGCTTCTTCTTACATCATGAAGATGATAGACCTTGGTATTTATTTAAAGGTGAAGAGAGAGCCCTAAGTGCCAAACAACATGGAGCCGCATTACTGTTGCATAAGTATGCAACTTTGGTTTGCACCCATGTCGGCGAGATCCTCCCAGTAGCTTCTTCACTGGCGTCAAATGGTCCACGTCACTTTGTAGTGTCCTCTCAAATAATCCAGCGAGAGCTAACTGGTGTTTTACTTCCTGAATTTCTGAGTGCAATGGTTCTGCTACAGACCTGTATGCCCAGCATTATGGACTCATCCAGAACAGTCCCTCTTATAAGTGGTCTTCTAGACCTGTTGGACAAGTTTAACAGGCTTGCTCCTGGCGTACAGAAGGAAGATGAGGAGGATTTGGCCTGGCCCGGTGGGATAGGCAGCCCAACACCAGCTCGGCGGAGAGCTGATGGTGACATTACATTCATAAGGCCTGAAGATCTGGAGAATCACAACAAAGATGGCGGTCTGTGGGTTGTTATTCATGGAAAAGTTTATGATCTTCAAGACTTCAAAGATCAGGCTCCTTGTGGAAAAGAACTGCTACAATCATATGCAGCCTCTGATGCAACTCAAATTTTTGAGGAAACGAAACACTCTGTAGAAGCAAGAGAAATGATGCAAGCCTTCTTTGTTGGGATTTTTGTTGAGCCTGATCAAGAGCTGGCCCTAGACAGTGCTCTGTCAGTATCATCACCACTGATTGACTGTGAGCGCACCCTTGGTCTGTTGCTGGGTCTCTATGCCTGTCACCTGGCTCACAGTACTCCAGTCACTACTGAAGAAGATGAAAATGAGAGATGGTTAACGTCAGATTTCTTCTCAGGTGGAATGGAAGCTTGTGCTGTTCATGTACCTGCCGGCAATGTTGGAAAAAAAGAGAAAGAGTCTTCAGAAGACAAGAGTGAGCCTTTTACAAGACAGATCTCACATGGTGATCCCGCTAAACCATTCCTACAAGCCCTTTCCGAGATTAAGGTGGAGGATGACACTGCCTTGAAATTTCTGGCTGCCATTGAACGCTTCTGTAAACAGAAGCGGTTTGTTTTGCCAATTGAATTCCCTGCCGATCATCCCGTGGAGAAGGTTGGACGGATTCTCATGGCTTGCCTCTTGAAACATCAGGAGCTGGgaaATGCTGCCTTAAGCATATTAGATGGCGAAGTGCTCTCGCCCACCTCTCCTGGATCATTGTCATCTCTGGATATAACAAGCTCAGCTTCTCAGAGCTCATTATCAAACACACCTCATGTTATAGTCCCCAAAGCTGTCAGCGAAGTCCTCAAAGTTGTGTACCAGACAAAGTGCGCACTTTTGAGGGCACGGCAAGAGTCATCACGCTCGTATGAAGAAGTCTGCTCCCCAGCGCTGGAGAGATGTCAGTTCCTGTTTACAGAGCTTCATCCCGCAAAGGCCAGTGAGGTGTCCACTCTGTCCCGTCTGAGGATACGCAATACACTTCCTCGCTGGGCCCGGATTGTTCGGCAGATGATCatggagaaaaagaaaacagatggaAGAGAAAAACCTGTGGCTAGAGAAGAAGGAGAAACAGTCCATTTAGATGTCGATCTCTTGGAAGAAAAAGCTTtgaaggaaaaggaaaatgttGAGCACAAGACTAAACATAAGGTTGACCACATAGCTCTGAATACTTCATTAACCAGTGCTCGTAAAGTGAAGTGGCTCCGCGAGCGAATGATCGGCTCCTCTGCAGAGACTCTTTTAATGAACCACATCAAGGATTTTGTTCTTTATGATGAGCCAGTTGATCTTGAGAAACTTCGAAATTGTCTTCACAGACAGTTGGAAAGGGGTCAACGTAGGTTGGAAGGAGCAGAAACGTTACTGTCTCTTGTGTCCAAGGAATATCTTATCCCGTCAGTCCGTTACTCGATCTTGTGTGGCTGGCAAGGTCTTCTTTCAACTCACCCACAAGCTCAcaaCGATGTTCCACACTGCACGGCCGATGTTGGTCTCATTCCACCATACGATCGTGTCATCCTAGAAACCGCTTTCCGCAGGATAAACAGCTGGGCTGTCAACACGCTACGTGAAGCAATCATCTACGCTAATGACACCTTCAAGAGAGCTGAATCAAGACCTAACACTGCCCCTGATGATTTTCATGGCGGCTTGTCCCTGGGTGCCCTCCCTGTGGCACGGTTTCTCCTGGCCACCCTGGGGATTCTTACAGCGGAGCATAACGCCAGTGACATGAGCCTCATACTGAACTCAGGCACCATCGGCTTGACTCAGACCATCATGCGCTTGGCAGGACCGTGTGAAGCTACAGAGGAAGAAGACTCAACCTTAGCTGCTATCATTGATGAAGCTAAGGCTGCAAAGAAGACTCCAAGTTTACCCATCACAGGGCCTGAAATGGCAAAAAGGATGAAAGTAGGGACTCGGGTGGTGCGGGGTCCTGACTGGAAATGGGGCGATCAGGACGGGCCTCCACCCAGCGAGGGCCGAGTTATCGGGGAGCTCGGAGAAGATGGTTGGGTGCGTATTCAGTGGGACACTGGCAGCACCAACTCATACCGGATGGGCAAGGAAGGCAAATATGACCTGAAGCTGGCAGGACCCCCTCCTGTACCAGAGAGCAGCGAAGAAGAGGAGGAAGATATGAAAGATGATTCAAAGAAGGAGAAAACAGAAATCCATTCCATTCACCCCACAACTCTGATACGGCACTCCTGCTTGTGTTTGTTGCAAGCCCTGGCCATTGGATGTGGTCTCCATGCCAACAGTGTACAGATTGAGAGTGTCAGAACAGTTAGCAGTCTTTTGCATAATCTCCTGGACGCTGGCACAGTTGGTGAAGTGGGTAGCATTGTGATGGCTCAGCAGCACAGAGACTGGGCCAAGCTCGGCTTCATCCGGGGTATTGCAGTATCCCCAGTCATGTGCTGTTCCCTTAGTACCCATCAATGGGTGGGTCTGCTACTCAGAGTGGTGCAAGGGTCGCTTCCTGATGACGACTCTCTGCCACCCACTGTATCTGCAGCCCATCTGCCACGACAGATCCTGGCTTTACGGTTGTTAAGAGCTGTTTTACCGTCATGGGACGTGACAAAGGAATCTTCCAGGATGTCTGAGgtagtagctaaattatttgcTTTGCTTGGAAGAGTCTTGATGACCTGTCATGGAAGTCTGCCTATCCAACCACCATCAGGAGAGAAAAGCCGTAAAAGTAAACGAAAGGCAAGAATCCCAGCCTCGGTTTCTGCCACGTACAGCAGCACTGTGGCTGAGGAGTTACTGGCACTGATACGCAAGCTTCACACATTAGAGGCCTGGAACCCACTGGTGAATGAGTTCATCAGTGCTCAACTGAAAAGTattgttaccatggtaaccacTAACAAGCCAGTTCAAGAAGAACGAGTCATACAGGAACCAGAGGAGACAACAGAGGAGCCTGTGAACCAGGGTCCAGTGATGGCCGTGTTAGCGGTCATTGGTGGCGTGGACAGCAGACCCAGACTTGGGGGACTGGTGCAACATAAGGAGTGGGGACTGGGAACAGTTTGTAGAATCGCTCCAAATGGAAAAGTAACTGTGCAGTGTGAAGGGCAACAAAAGGCTAAAATATGCTCCATATCACAGGTTAAACCGGTACCAGTTGTTCCATTTTCGGTAGACAACCTTCCAATGTCGGATGCATCACTGGGGATCTGGGCTTCCCTCGTAAGACTGGCGGGAACTGGCAAGAAAACCGCTGACACAGATCAGGAGAACTTCCAGCTACCAGCAGTACCAGGGGAGGAGGGGGTGGAATCTGTTAGATGTCCCCCTGTTAGACCACTCATGCCTCCTAAAATGGGAGGTGAAGATGTGGACACATCGCAGTTGAGACAGCAGCAGATCACACTAGGACTTCTAAAGGCTGCCCGTGTGTTGTGCAGCAGACAGGATAACTTGAGACAGATCCTGAATCACCAGGCTGATAGCTCAGATGGCAGCAGTACATTCTCCTTACAGCAACTCATGTGCTCTGCTATTAAACCCTCACCTATCAAGGCACTCTTTGACAGAGAAGAGTTAGAGGCTGCTGCCCTCGCCGCTTGTCAATTCCTTGCCAATGAAGCTAGCCGTCCAGCCGAGCCTCCCGCACCAGCTGCGCCAGCTGAGACTGGACCTGAGCAGGAAAAGCCTCAACCCCAGTCCTCCACCAGGAAGACTTCCAAATCAAAACATCTGCAGAAAAAGAAGGCTCGCACACGAAAGCCCactccaccccctcccccaccgtTAGTGCAGCAACTGGTGGAAATGGGTTTCTCTAGAAACCGAGCAGAGTATGCACTGAAGGAACTGGCGGACGAGGAGGAGCCTCGGGCCGAGTTAGTTGTGGCTTGGCTGATTGACCATTCTGATATCGAGGTTCCCGAGGGCCAAGACCGACAAGTAACCCCACCAGAACTAACATCCAGCGACGACTCCTCAGACGTGGATGATGATGATAGCGATGTAGTGTCCAGTAGCGATACAGACAGCAGCTCAAGTGAAGGCGAGGCCATTGCCTTGCCTACTGAGTTCAAACGGCGCAGTGACCTGTCCAGTAATGACGAGTATGCTAGGTATGTGCGGGATAACGTTCAGGTCGGCATGATGGTGCGGTGCTGCAGGACATATGAGGAGGTGCATGAAGGAGACATAGGAAGGGTCATTAAGCTCGACCGCGATGGCCTCCATGATCTGAACGTACAATGCGACTGGCAGAAAAAGAACGGAACCTACTGGGTGAGATACGTACACGTGGAGCTTTTAGGACATGATTCCTACGcCCGGCGTGAGATGATCAAAGTTGGTGACCGGGTGCGTGTGAAACCCTCTGTGACCACGCCCAAGTACAAGTGGGGATCTGTTAACCATGGTAGTGTAGGTACAGTGGTGTCTATCAGTCCAAACGGTAAAGATGTCAAGGTAGACTTTCCACAACAAACCAACTGGACTGGTCTCATCTCTGAGATGGAGGTCGTACCTGCTACCCATCCTCGCATCAGGTGTGATGGCTGCCACATGGAGCCCATCGAAGGTCCCCGCTACAAGTGCAAGACTTGTACTGATTTCAGCTACTGTGAGAATTGCTTCAGACTGCGCCGCAATCATCGTCACTCCTTCCACCGGTTTGAAGAGCCCAGCAGCATTCCCGTGAACGCTGGGAAAGCGGGGCGAGGAAAGAAGAAGATCGTATCCGGGGGTTTAGGAGGACCGGAGCACATCGTCAAGGAATGGGACCGGGTGGTAAAGAGCCTTATGGTGTCCTCACGGGAAAGTCAAGCAGAGAGACTAATTGATGGCACGGAATCCTATTGGCAGTCTGCGGGATCCCAGGGAAAGCACTGGATACGCATGGAGTTGCATCCAGATCTTTTGATCCAGCGGTTAACCATGACAGTGGACCCCTCAGACAGCAGCTACATGCCGTCGGTAGTGGTCATTTCAGCTGGGGACCGCATTCAGTCATTGAAGGAAATTAAGACTGTGCATATCAGTGCCACTGATTCCGTTTGCACTCTTCTGGACGAGACACAAGAGGAATATCGCTTCTTGGAAATTGGCATCCGTCAGTGTAAGAGCAGTGGCATTGATTGTAAGATTCACGGAATTAGTCTGGCAGCTCGGGCTAAAGCGGACGATGATGATATGGCTGCCAGCTTTTCTTTCCTCGCTTTAGATGAAGAGGATGAAGCAGCAAGACAAAGAAGGGCGCTAAGACGAAAACCATCCATCCATCCTGAGCCCTCCCCTGAAGGGCAAGTGAAGGTGTTAGTTTGGGGTTTGAATGACAAAGATCAGTTGGGAGGTCTGAAGGGATCCAAGATTAAGATGCCGTCAATTTCCGACGCCTTATCTAGTCTTAAAGTTCAGCATGTCCGCGGTGGTTCAAAGAGTTTGTTTGCCGTCACTATGGAAGGAAAAGTGTTCGCTTGTGGGGAGTCCACTAATGGCCGTCTGGGACTGGGACCCTTATCCGGGAACGTGCTTATGCCCCGCCAGATTGAAGCTCTGAGTCAATTTGTGGTGAAGAAGGTCGCGGTGCATTCTGGGGGCCGACATGCCATGGCCATCACAATCGAGGGCAAACTGTTCTCGTGGGGGGAAGGGGAAGATGGAAAACTTGGACATGGAAATAAAATGAATTATGACCGCCCCCAGCTTGTTGAGGCGTTTAAAAGCAGGTTTGTACAAGAGATCTCTTGTGGCAGCTCACACAGCGCTGCTGTGCTTTTCACAGGCGAGCTCTTTACCTGGGGCCTGGGCGAGTATGGCCGTTTGGGGCATGGAGACAACCAGACACAACTCAGACCCAAACAGGTCCGCGCGTTATCAAGTCACCACGCAATCGACGTTGCCTGCGGCAGTCGTGATGCCCAGACCCTCGCACTCACCAGCGACGGTTGTGTTTGGTCGTGGGGAGATGGTGACTTTGGAAAGCTGGGTCGAGGCGGAAGTGAGGGTTGCAGTGTGCCGCATGTAGTGGAGAAACTCAAAGGACAGGGTGTTTGTAAGGTGCTGTGTGGAGCTCAGTTCTCTCTCGCTCTTTCAAAATCTGGACAAGTGTGGACTTGGGGTAAAGGAGATTACTTTCGCCTTGGTCACGGCAGTGACTCTCATGTTCGTAAGCCTCAAATTGTGGAGGGACTCAAAGGAAAGAAAGTTGTAGATGTTGCAGTGGGAGCTTTGCACTGCTTAGCTGTTACAGAAGAAGGACAAATTTTCGCCTGGGGTGACAATGATCATGGGCAACAAGGGAATGGAACGACAACGGTCAATCGCCGCCCGCAATTGGTCCTGGGACTGGAAGAATTCAAAGTCACTCGCGTGGCTTGCGGTTCCTCTCACAGCATGGCCTGGGCCGAGTCTGACTTCCCGACACCCACCACGCACGAGCCCGTCATGTTCCCTGCGTCCCGAGATCCACTGGGGGCGTCATGTCTCGGCCCAGACTCCCAAGAGCAAAGTGTTTCAGCCGAAACAGAAAGCAACGAGTACGGGGAGCACAGACACAGACCTTCCCTGGCAAAAATCGTGCTTTCGCTTAATTCCAATTATGAGCGCCAACAAGCGCTTGGCCATATTCTAAGTGCCCTTCAAATAATCTACTCACGTGACGCAGTAGTGCGAGCTCTTATGGACCCTCATTCGTTCATTCGCGGCGACTCCAAACCAACGGATACAGAAGATGAGGAAGTTGTGTCCCTGGCTTCCCCGGAAGTCTCTATCGATGACGTCACCTTAAAGGACGTGGCAAGTACCTCCCGGAGGTCGCTGATCGTGGGAGTAGATGAGTTCACGGGCAGCCTTGGACACGATGACTCACGGCTTCTAGTGGAGCTGTTGAAGCTTGCTGTGGCTGATCGGGCTGGTGAAAACGGAAGAGAAGTGCTTTCTGGAGTTTTGAAGTCTTTAGCAGAAACCAAAACAGAGATAGCTTCGATGCTGCTGGAGCTATGCATCACAGAGCTGGAAGACGTGGCTACAGATAACAGCAGTGTTCACAGTAACTTCCAACCTGTTGTACAGGAGAGCAGTCACCCGTACACTGATGATACCAACACCACGGGTGTGGTCAAGATACCAGGGGCAGAGGGGCTGCGGGTCGAGTTTGACAAACAGAGTTCCACTGAGAGAAGGCATGATCCGCTGACCATCATGGACAGCACTGGCCGCCTGGTCTCTGTCCGTTCTGGCCGCGAGTGGTCTGATTGGTCAAGCGAACTGCGCATGAGTGGAGACGAGCTCCGCTGGAAGTTTATGAGTGACAGCTCAGTGAATGGTTGGGGATGGCGCTTTACCGTGTACCCAATACCACCAGCCGCCGCACCGTGTGACGTATTATCGGACAGGGCGTTGCAGTCAAGGCCTTCTATTGACTTGGTTCGCTGCCTTCTTGACTTCAAACTGGAAACCCTTGGTGATACAGCCCAGATCCCCCGCCTGGCTTCATCGTTGTCCGCATGTGCACAACTCAACACTCTCTCCGCTGGCCAGAGAACGTGGGCACTCAATCGCTTGAGGAAGCTTGTGTTGTCAGAAGTAGGACCAACAGTTGATGTGTCCGCGCTGTTTGGGTACAATCTGATGTACGATCAACCACTCAAACTGAAGCAGAACAGTAACCAGCGCATGAGCACGGCTGTCTCTTCCTCGGCACTCGGGAAACTAATCCGAGGTCTTCCGGACACTTTACGAAGACAGTACGAGTATGAGGAACAGCTAGTCCGAGGGGGCAAGCATCTTTTTCACAGCGACTTCTTGAAAGTTCTTGTCGCTTTTGCGTGTGATCTATCACTTGATGAGCTGCCATGCTGTGCTGACGGGCACAAGTGGGCCTGGTTCCGACGCTTCTGCCTGGCGTCACGAGTTGCGCAATCACTTGAGTTCAGGACCCCTTTGGCGTACGACTTTCGGATGGAAGTCAAGGAAAAAATCTCGGAAATGGTCCAGGAGAGTGAGGAAGGCGCAGTAGATTACACTGATCATAAGGTGTTTAAACGTGAACATGACGAGCAGCTGCTGTTGTGGCTAAACCAGCGCCCCTCTGATTGGACGGTAACCTGGGGCGGAAGTGGCACAATCTACGGCTGGGGACATAATCACCGCGGCCAACTGGGCGGAATTGAAGGCGGGAAAGTCAAGTTTCCTCAGCCATGCGAAGCCCTCAGCGCCATCAGGCCTGTGCAGATTGTTGGTGGCGAGCAGACTCTTTTTGCTGTGACGGCTGAGGGAAAGGTCTACGCCACCGGGTATGGGCACGGCGGGCGCCTGGGACTCGGCGGAACAGAAACTGTGACGTCAGTGCGACTGATAGAGTCCCTCCAGCACGTGGTCATTAAGAAGGTCGCAGTGCATTCTGGGGGAAAACACGCCATGGCGCTATCCATGGACGGTGACGTTTACTCTTGGGGAGAAGGAGATGATGGGAAACTTGGACACGGTAGCCGGAACTCGTGTGATCGTCCGCGTGTCATTGAAGCCCTTCGTGGCAAGTCTCTCATAGACATCGCATGTGGTGGCTCCCACAGCGCTTGCATCACAAGCAATGGCGAGTTATACACCTGGGGCAAGGGACGCTACGGACGGTTAGGGCACGGTGACAGTGAAGATCAAGTACTGCCAAAACTAGTGGAAGCGCTTCGCGGACAGCGTGTCATAGACGTGGCATGTGGCAGCGGGGACGCCCAGACGCTGTGTCTGACTGATAATGACTGCGTGTGGTCCTGGGGTGACGGAGATTACGGCAAGCTTGGTCGAGGAGGAAGTGATGGATGTAAGATTCCGATGAAGGTGGAGTCACTCATTAGGGCGGGTGTGTGTAAGGTGGAGTGTGGATCGCAGTTTTCTGTAGCGCTGACTAAGTCTGGTGCCGTTTATACGTGGGGAAAAGGTGATTATTACCGCCTCGGTCACGGCTCAGATGATCACGTAAGACGTCCTAAGAGGGTGGCAGCtctgcaaaacaaaaaagtaGTCGCCATAGCAACAGGCTCTCTGCACTGCGTGGCGTGCACGGACACAGGTGAAGTGTACACGTGGGGCGACAATGACGAGGGACAGCTGGGAGATGGATCAACCAATGCCATCCAGAGACCAAGACTGGTCACAGCTTTGCAGGGCAAAAAGACAAATCGTGTGGCGTGTGGCTCAGCGCACACAATCGCCTGGTCTACCACTAAACCCGCCAATGCCGGCCGCCTCCCCAGGGAAGTCCCTATGGAGTATAACCACTTGCAGTTAATCCCCCTGGGAACTCTTCGCAATCGCCTGATGCTCCTCCATCACTTCTCCGAGCTTGTGTGTTCCTCGCTCGCCATGTTTGATCTTCAACCGCGAGTAAAGGAGCATGTTGGTCAGGAACCATTGGTAGCTCTTGATGCCTTGAGAGGCGTGCTGATCCCATCTGGGAAGGAAGCAGCCTTCCGTAAGGTTGTTCAGACGACCATGGTTCGTGACCGACAGCACGGTCCTGTGATTGAACTCAACCGAATACAGATCAAGAAATACCGATCCAAAGGCGGTCTGACCGGCCCTGACGGTTCTAAATCTGTTTTCGGTCAAGCTTGTTCCAAGATGAGCAATTTTGGTCCCGATTCCCTGTTCCTCCCGCACCGAGTCTGGAAGGTCAAGTTCATCGGCGAGAGTGTAGACGATTGCGGAGGTGGCTACTCTGAGTCTATCGCCGAAATGTGCGATGAGCTTCAAAATGGCTCCCTACCGCTGTTGATTGTCACTCCTAATGGGAGAGATGAGTCAGGAGCAAACCGTGACTGCTTTATTCTGAATCCGGATGCCTGCTCTACTGTTCATCTCAGCATGTTCAAGTTCCTGGGTGTGTTGATTGGGATTGCTATCAGGACAGGCAGCCCGCTAAGCTTGAACCTTGCTGAACCTGTCTGGCAGCAGATGGCCGGAATGTCATTGCGAGTGACAGACCTGGCTGAAATCGACAAGGATTACGTGCCTGGTCTAATGTGCATCCGGGACATGGAACGCGAGGCGTTTGAAGCCATGGAGATGCCGTTCAGTACTCCAAGCGCCAGCGGTCAGGAAGTACAGCTGCATAACAAGATTAAAAGAATCACGCTGGACAACAGGGAAGAGTACGTGAGATTAGCGCTACATTACCGCTTGCACGAGTTTGATGTACAGGTATCCGCAGTTCGTGAAGGCATGGCACGAGTAGTCCCAGTTCCCTTGCTGTCACTATTTACCGGCCCTGAACTGGAGACGATGGTTTGCGGTAGTCCCGACATTCCTCTGGACCTGTTGAAGTCCGTGGTGACGTATAAAGGAGTGGACGCTAGCGCGCCATTGGTTCGTTGGTTCTGGGAGACACTCGAGAGTTTTTCTAACGCTGAGCGCTCCTTATTTCTTCGGTTTGTTTGGGGACGAACCCGACTCCCGAGAACTATTGTGGATTTCAGAGGCAGGGACTTTGTATTCCAGGTCCTTGACAAATATTCGCCCCCAGACCATTATCTGCCAGAGTCCTATACCTGCTTCTTCCTTTTGAAGATGCCGCGATACTCGTGTCAGCGGGTGCTCTGCGAAAAGCTCAAGTATGCCATCCATTTTTGCAAGTCCATCGACTCGGACGACTACGCCAGGATCGATCTCACTGGAGAGCAGGCTGAGGAATATGATACTGATGTGGAGGCGTTCTAG

Transcript

BRAKERTYJT00000033734

Protein

BRAKERTYJP00000033734.1

MSLTSTQSYEAPVSLTQESIDEIVWWRDQLSAWNGKALFLQPIDLVIETDASRQGWGAYCEGIRSGGPWVLHEQRLHINCLELLAGSFALKSFTRDKACVHVHLLMDNVSAVSYINKMGGTHSRLLSNLAISLWEWCLEHHLVISAQHLPGVLNSRADRESRTMIDSSDWKLKHSIFQTLLNLWGPFRVDLFASRLTSQLPQFASWRPDPLATYTDAFSLNWKGLQGYAFPPFALIGRVLQQILSQEVDQLVLVAPVWPSQPWYPLLLSRAVDLPLLLPITPDLLTREGHTHPLPNLQLAGSRQIFRLGQEGFEISFFFHPEGVSFKLPELSKTSRPGQNPKLSFHASLLEDLELCPVACLREYESRTKSYRPENSSVPDKLFLSYIHPHKPVTSSTLARWIKFALKESGIDTSMFTAHSVRSAATSEAANQGISVSEILSMADWTQESTFVKFYYRPKVTSNAGRAVLSGISSEGKGDGSRLGHVTEDHVRYPKMIEAFSSKKVVDVAVGSVHCLVATEDGEVYSWGKNEQGQLGDTSNIARAEPTLIVSLDSKEITGVACGPAQSFAWSSAGHWSVGLRLPFCLDVCKKTFEHLDALLRRVSEDLTGALDWPPPPQEKECIAVATLNLLRLQLHAAITGNVDADDIGLGVGSKLLQSLKQQVVTLASNKGVLKTVQCAAQGALRNGWVLLLPTPEERARALTELLIETCDKPTSSPAGKKFMSDLLISSLMAEGSLESALETAIDNEVKEGAGENDKEKTSESKDKIVDVPLIHLTQQLLKTSSTQVLSEFQQLFLKPPILQWPYMPPPRPMTVELLLKLQRLLIGSFFLHHEDDRPWYLFKGEERALSAKQHGAALLLHKYATLVCTHVGEILPVASSLASNGPRHFVVSSQIIQRELTGVLLPEFLSAMVLLQTCMPSIMDSSRTVPLISGLLDLLDKFNRLAPGVQKEDEEDLAWPGGIGSPTPARRRADGDITFIRPEDLENHNKDGGLWVVIHGKVYDLQDFKDQAPCGKELLQSYAASDATQIFEETKHSVEAREMMQAFFVGIFVEPDQELALDSALSVSSPLIDCERTLGLLLGLYACHLAHSTPVTTEEDENERWLTSDFFSGGMEACAVHVPAGNVGKKEKESSEDKSEPFTRQISHGDPAKPFLQALSEIKVEDDTALKFLAAIERFCKQKRFVLPIEFPADHPVEKVGRILMACLLKHQELGNAALSILDGEVLSPTSPGSLSSLDITSSASQSSLSNTPHVIVPKAVSEVLKVVYQTKCALLRARQESSRSYEEVCSPALERCQFLFTELHPAKASEVSTLSRLRIRNTLPRWARIVRQMIMEKKKTDGREKPVAREEGETVHLDVDLLEEKALKEKENVEHKTKHKVDHIALNTSLTSARKVKWLRERMIGSSAETLLMNHIKDFVLYDEPVDLEKLRNCLHRQLERGQRRLEGAETLLSLVSKEYLIPSVRYSILCGWQGLLSTHPQAHNDVPHCTADVGLIPPYDRVILETAFRRINSWAVNTLREAIIYANDTFKRAESRPNTAPDDFHGGLSLGALPVARFLLATLGILTAEHNASDMSLILNSGTIGLTQTIMRLAGPCEATEEEDSTLAAIIDEAKAAKKTPSLPITGPEMAKRMKVGTRVVRGPDWKWGDQDGPPPSEGRVIGELGEDGWVRIQWDTGSTNSYRMGKEGKYDLKLAGPPPVPESSEEEEEDMKDDSKKEKTEIHSIHPTTLIRHSCLCLLQALAIGCGLHANSVQIESVRTVSSLLHNLLDAGTVGEVGSIVMAQQHRDWAKLGFIRGIAVSPVMCCSLSTHQWVGLLLRVVQGSLPDDDSLPPTVSAAHLPRQILALRLLRAVLPSWDVTKESSRMSEVVAKLFALLGRVLMTCHGSLPIQPPSGEKSRKSKRKARIPASVSATYSSTVAEELLALIRKLHTLEAWNPLVNEFISAQLKSIVTMVTTNKPVQEERVIQEPEETTEEPVNQGPVMAVLAVIGGVDSRPRLGGLVQHKEWGLGTVCRIAPNGKVTVQCEGQQKAKICSISQVKPVPVVPFSVDNLPMSDASLGIWASLVRLAGTGKKTADTDQENFQLPAVPGEEGVESVRCPPVRPLMPPKMGGEDVDTSQLRQQQITLGLLKAARVLCSRQDNLRQILNHQADSSDGSSTFSLQQLMCSAIKPSPIKALFDREELEAAALAACQFLANEASRPAEPPAPAAPAETGPEQEKPQPQSSTRKTSKSKHLQKKKARTRKPTPPPPPPLVQQLVEMGFSRNRAEYALKELADEEEPRAELVVAWLIDHSDIEVPEGQDRQVTPPELTSSDDSSDVDDDDSDVVSSSDTDSSSSEGEAIALPTEFKRRSDLSSNDEYARYVRDNVQVGMMVRCCRTYEEVHEGDIGRVIKLDRDGLHDLNVQCDWQKKNGTYWVRYVHVELLGHDSYARREMIKVGDRVRVKPSVTTPKYKWGSVNHGSVGTVVSISPNGKDVKVDFPQQTNWTGLISEMEVVPATHPRIRCDGCHMEPIEGPRYKCKTCTDFSYCENCFRLRRNHRHSFHRFEEPSSIPVNAGKAGRGKKKIVSGGLGGPEHIVKEWDRVVKSLMVSSRESQAERLIDGTESYWQSAGSQGKHWIRMELHPDLLIQRLTMTVDPSDSSYMPSVVVISAGDRIQSLKEIKTVHISATDSVCTLLDETQEEYRFLEIGIRQCKSSGIDCKIHGISLAARAKADDDDMAASFSFLALDEEDEAARQRRALRRKPSIHPEPSPEGQVKVLVWGLNDKDQLGGLKGSKIKMPSISDALSSLKVQHVRGGSKSLFAVTMEGKVFACGESTNGRLGLGPLSGNVLMPRQIEALSQFVVKKVAVHSGGRHAMAITIEGKLFSWGEGEDGKLGHGNKMNYDRPQLVEAFKSRFVQEISCGSSHSAAVLFTGELFTWGLGEYGRLGHGDNQTQLRPKQVRALSSHHAIDVACGSRDAQTLALTSDGCVWSWGDGDFGKLGRGGSEGCSVPHVVEKLKGQGVCKVLCGAQFSLALSKSGQVWTWGKGDYFRLGHGSDSHVRKPQIVEGLKGKKVVDVAVGALHCLAVTEEGQIFAWGDNDHGQQGNGTTTVNRRPQLVLGLEEFKVTRVACGSSHSMAWAESDFPTPTTHEPVMFPASRDPLGASCLGPDSQEQSVSAETESNEYGEHRHRPSLAKIVLSLNSNYERQQALGHILSALQIIYSRDAVVRALMDPHSFIRGDSKPTDTEDEEVVSLASPEVSIDDVTLKDVASTSRRSLIVGVDEFTGSLGHDDSRLLVELLKLAVADRAGENGREVLSGVLKSLAETKTEIASMLLELCITELEDVATDNSSVHSNFQPVVQESSHPYTDDTNTTGVVKIPGAEGLRVEFDKQSSTERRHDPLTIMDSTGRLVSVRSGREWSDWSSELRMSGDELRWKFMSDSSVNGWGWRFTVYPIPPAAAPCDVLSDRALQSRPSIDLVRCLLDFKLETLGDTAQIPRLASSLSACAQLNTLSAGQRTWALNRLRKLVLSEVGPTVDVSALFGYNLMYDQPLKLKQNSNQRMSTAVSSSALGKLIRGLPDTLRRQYEYEEQLVRGGKHLFHSDFLKVLVAFACDLSLDELPCCADGHKWAWFRRFCLASRVAQSLEFRTPLAYDFRMEVKEKISEMVQESEEGAVDYTDHKVFKREHDEQLLLWLNQRPSDWTVTWGGSGTIYGWGHNHRGQLGGIEGGKVKFPQPCEALSAIRPVQIVGGEQTLFAVTAEGKVYATGYGHGGRLGLGGTETVTSVRLIESLQHVVIKKVAVHSGGKHAMALSMDGDVYSWGEGDDGKLGHGSRNSCDRPRVIEALRGKSLIDIACGGSHSACITSNGELYTWGKGRYGRLGHGDSEDQVLPKLVEALRGQRVIDVACGSGDAQTLCLTDNDCVWSWGDGDYGKLGRGGSDGCKIPMKVESLIRAGVCKVECGSQFSVALTKSGAVYTWGKGDYYRLGHGSDDHVRRPKRVAALQNKKVVAIATGSLHCVACTDTGEVYTWGDNDEGQLGDGSTNAIQRPRLVTALQGKKTNRVACGSAHTIAWSTTKPANAGRLPREVPMEYNHLQLIPLGTLRNRLMLLHHFSELVCSSLAMFDLQPRVKEHVGQEPLVALDALRGVLIPSGKEAAFRKVVQTTMVRDRQHGPVIELNRIQIKKYRSKGGLTGPDGSKSVFGQACSKMSNFGPDSLFLPHRVWKVKFIGESVDDCGGGYSESIAEMCDELQNGSLPLLIVTPNGRDESGANRDCFILNPDACSTVHLSMFKFLGVLIGIAIRTGSPLSLNLAEPVWQQMAGMSLRVTDLAEIDKDYVPGLMCIRDMEREAFEAMEMPFSTPSASGQEVQLHNKIKRITLDNREEYVRLALHYRLHEFDVQVSAVREGMARVVPVPLLSLFTGPELETMVCGSPDIPLDLLKSVVTYKGVDASAPLVRWFWETLESFSNAERSLFLRFVWGRTRLPRTIVDFRGRDFVFQVLDKYSPPDHYLPESYTCFFLLKMPRYSCQRVLCEKLKYAIHFCKSIDSDDYARIDLTGEQAEEYDTDVEAF

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002592 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18346 all species →	SH3_15	Mind bomb SH3 repeat domain	Domain	Interproscan
PF11515 all species →	Cul7	Mouse development and cellular proliferation protein Cullin-7	Family	Interproscan
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF00173 all species →	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan
PF03256 all species →	ANAPC10	Anaphase-promoting complex, subunit 10 (APC10)	Family	Interproscan
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF00589 all species →	Phage_integrase	Phage integrase family	Family	Interproscan
PF06701 all species →	MIB_HERC2	Mib_herc2	Domain	Interproscan
PF00415 all species →	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000408 all species →	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR040847 all species →	Domain	Mind bomb, SH3 repeat domain	Interproscan
IPR051210 all species →	Family	Ubiquitin ligases and GEF domain-containing protein	Interproscan
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR021097 all species →	Domain	CPH domain	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR037252 all species →	Homologous_superfamily	Mib/herc2 domain superfamily	Interproscan
IPR004939 all species →	Domain	APC10/DOC domain	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR036400 all species →	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR001199 all species →	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR002104 all species →	Domain	Integrase, catalytic domain	Interproscan
IPR010606 all species →	Domain	Mib-herc2	Interproscan
IPR037976 all species →	Domain	HERC2, APC10 domain	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22870 all species →	REGULATOR OF CHROMOSOME CONDENSATION	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10595	HERC2; E3 ubiquitin-protein ligase HERC2	EC:2.3.2.26	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Cladopsammia gracilis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Cladopsammia gracilis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →