Gene detail

Detailed information of BRAKERTYJP00000039703.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000039703

ATGGCCTTTTGCAGTTTGATTTATTCTTACTCGAGGAATCACGTGCATTCCGTTTTGTGCCGTCATTTTGGAAAACGCAATACTTCCATTTGGAGAAGCTTTTCTCCTTTTCCAACTCGTTGCACGCTCTCGAGGAGTTGCGTCAGCTTATCTAAAACTTTTACCACATTAAACAAAAAGGATTGTTCGTGTTCGTGGCTGGGACATCTGCAAAGACAATTTGACATCAGAAAATCAGGTTTGCATTCCTCAAGTAGTTTGTTGCTACAAAGAGATGCGGTTAATTTTTCGGAAGAAAGTGACAGTGAAAAAGACGTTAAAATATGTTATAAAACAGAGACAGGGAATTTATCGTCCGTCAATGACAACTTGAATGAGCAACAGTCCGAAACATTGGATGTACCTAACCAAGTGGACAGAGTAGAAAATGTAGAAAATGAAAGCGTGATTAATTGCGGTACGATAGCTGAACATGTCACATTGTTAAAGGACGCAAAACGTTCTGTTGAGAGGATTTCATCAGAAACAGAGGATTTTGGAAGCATTGTTTTGCCGAAGAGAGTTGTACTTACACCAGGAAAAgttaataaatttttaattgaCTTCTTTGAAGATAAGCAAGTTAGAAAAACTGCACTTGAAAATGGCATAACTGGCAAATTATTCCACCAGATTTTCCAAGAGTTCAGAAGAAAGATTCTTTCACAGACAAAGAAAGGAAACAGAGAAATGTTGAAAGCATTTAGTAAAACATATTATAATTCTGACCATGTGGAAAACCTGTTTCCATTATTTTTGGCATTTGCACGACAAGTACATCCCATGCTAGACTGCATTGATGAGGTCAAAAAGATTTCAGACTTACGTGGTCCTGCAGACTTATTCCCAGAGGCCAGAGCGATTAAAAGGAAAATCATATACCATGCTGGTCCTACTAACAGTGGAAAGACGCACTCTGCTCTTGAGAGATTTCGAGCATCTGATTCTGGATTGTATTGTGGGCCACTGCGGCTGCTAGCGACGGAGGTTTTCAGAAGAACAAATGAGGCTGGAATACCTTGTGACTTGCTAACTGGTGAGGATAGACAATGGGCAGTATCATCAGATGAACCTGCCAATCATATCGCTGCAACTGTTGAGATGTGCTCCACAAGAAGGCCTTATGATTGTGCAGTGGTAGACGAAATTCAGATGATGAACGATAATGAAAGAGGCTGGGCGTGGACACGAGCCCTGTTAGGTCTGCCATGCTCAGAAATACATATTTGTGGTGATAGCTCAGCCATTGATATTGTAAAAAGATTAGTGTCTTCTTGCAATGATGAATTGGAGATTCAGCATTATGAGAGACTCTCCCCTCTGACAGTGAAACATGATCATAGTCTTGATGGGAAGATTAGAAGAGTCAAGCCTGGAGACTGTGTGGTAGCTTTTTCCCAACGGGATTTGTATCAGTTAAGAAGGGAGATTGAAAAGAAAAGGAACCAGAAGTGTGCCATTATTTATGGAGGCCTTCCACCAGCCACTAAGGTAGAACAGGCAAAGAAGTTTAATGATCCTGATGATGACTGTTCAGTGCTTGTAGCCTCTGATGCTATTGGAATGGGACTCAATTTAAATATTAAGCGGATTGTGTTAAGTACCCTGATGAAGTATGATGGACAAAATGTGGTACGACTAACATCTTCTCAAGCCAAACAGATCACAGGAAGAGCTGGAAGATATGGCTCTGATCACCCTAACGGCGAAGCTTTAACATTTAGGAAAGAAGATGCTAAAATACTTCACTCGCTGATACATGAACCAACACAGGATGTTAAGGCAGCAGGTTTGGCGCCGAGTATGGAGCAGATTGAGATGCTGTCGGAACAACTCCCAGATGCAAGTCTCGTCAAACTATACGAAGTTTTTGAAAGCGTTGTTCAGTTGGATGGTGCTAACTATTTCATGTGTGATTTGGAATTCAGGAAGAAAGTAGCTGTTAAACTCCGCGGAATTCCTCTGAGCATAACAGAGCAGTACGTGTTCAGCACGGCACCAATCGGCTCCAAGACCATGGAACTGGCAGTCAAGTTTGCACATAACGTGAGCCATGAGGTACCACTCACGTCATCCATGTTAAAAAAGATGATCAAATGGCCTCCAAAGACACCCAGGTCCCTGCAGCAGCTGCAGAATTTGGAGGCGTTACACGAGGGACTGGATCTATATCTTTGGCTCAGTTACCGTTTCTCGCACATATTTGTGGATTTGGAGGAAGTGTGTGAGATGCAGCAGCGCGTGGAAGGTATCATCGGAGAAGCGGTGTCATCAAACACGCTTGGACTGTTACAGCGCCCGCGTAGAACACGCTTTAATGATAACAAAATCCTCAAGTGGTTAAAACGACAATAG

Transcript

BRAKERTYJT00000039703

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF12513 all species →	SUV3_C	Mitochondrial degradasome RNA helicase subunit C terminal	Family	Interproscan
PF18114 all species →	Suv3_N	Suv3 helical N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050699 all species →	Family	RNA/DNA Helicase	Interproscan
IPR044774 all species →	Domain	Suv3, DEXQ-box helicase domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR022192 all species →	Domain	Mitochondrial degradasome RNA helicase subunit, C-terminal domain	Interproscan
IPR041453 all species →	Domain	Suv3, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12131 all species →	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000965 all species →	Biological Process	mitochondrial RNA 3'-end processing	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0045025 all species →	Cellular Component	mitochondrial degradosome	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016817 all species →	Molecular Function	hydrolase activity, acting on acid anhydrides	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17675	SUPV3L1, SUV3; ATP-dependent RNA helicase SUPV3L1/SUV3	EC:5.6.2.6	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.